Tflu024926.2
Basic Information
- Insect
- Tetheella fluctuosa
- Gene Symbol
- -
- Assembly
- GCA_951216915.1
- Location
- OX578242.1:2396018-2397403[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.8e-06 0.0003 21.8 0.3 1 23 7 30 7 30 0.96 2 12 0.081 6.2 8.2 2.2 1 23 35 58 35 58 0.95 3 12 5.2e-07 4e-05 24.5 0.7 1 23 60 83 60 83 0.98 4 12 0.0089 0.69 11.2 1.6 2 22 90 110 89 110 0.95 5 12 0.091 7.1 8.0 0.7 1 23 167 190 167 190 0.92 6 12 0.05 3.9 8.8 0.2 2 23 262 285 261 285 0.93 7 12 2.2e-06 0.00017 22.5 0.5 3 23 292 313 291 313 0.94 8 12 0.00095 0.073 14.2 4.1 2 23 318 340 317 340 0.95 9 12 0.00012 0.0096 17.0 2.3 1 23 345 368 345 368 0.95 10 12 1.4e-05 0.001 20.1 5.9 1 23 372 395 372 395 0.98 11 12 0.0003 0.023 15.8 1.0 2 23 402 423 401 423 0.96 12 12 5.5e-05 0.0042 18.1 0.4 1 23 429 451 429 451 0.97
Sequence Information
- Coding Sequence
- ATGCACCCCAAAAATAGTTTCATATGCGACGATTGTGGaatcacttttaataaaaagagaGATCTGTCTGTACATATAAGAAACTTGCATCGACAAGGTGGATATCCTTGTGACCAGTGCTCACAAATTTGTGACTCGTATTTCACATTACGccaacacaaaaataacgcACATTTTTACAAGTGCAACAACTGCGGGTTAAGATTCGCAACGCAAAAGCTTTTACGAAAGCATATACAAATCGATCATCCTGAAAGTTCAGATTTGAAATGCAGTTACTGCTCAAGCGAGTTCCATACTTCTCAAGGATTGAAGCAGCACATTAGGAAATGCAAAGTTAGACTGATAACTCAAGTCGACTCAACTAATATATCGTTCCCTGTTGAGAATAATTTGGGCTTAGAAccgaaaaagaaacaaaatgtcTTACAAATAAGACAGAATATAATATGCGTGCTCAATATGTCGACAGCTATTCCTTTCCagtttttttccaaattcaGTTGCTTTTATTGTAGTCAAAAGTTTGTGGAATACGAGGTATTGAAAGAGCATACAATTTTGGAGCATCCCGTTTGTGATTTGAAGTCGAAATGTATGAGGAAATGCAAAGGGGAACGTATAACTGTGAAAATTGACGTTGCGTGTCTAGCTTGCAAAGTTTGCTGCCTCCCGATGCCTGATTTAGACTCTTTCATTGAACACGTCATATCAGATCATAAAGCGAACTATGACAAATCTATTACTTGTCTCGAGCCTCATCGTATTATAAAGGACAATATGCCGTGCCCCTTATGCCCTAACGTCACGTTTAGATACTTCACAACGTTATTGCGTCATATGAACTTGGAGCATAATAATAACAATCGAATTTGCGATTATTGTGGTAAAAGTTTTCGTACGGTGACCAATTTGAAAGTTCACATATCATATACGCATACAAAGTCGAGTGAATGCGATGACTGTGGCGTTAAATTTAAGAATCAGTGGTGCTTGTCACGGCATAGAGCAAAATGTCACAATGTTAAGGACTTTAAATGTCCTAAATGCCCCGAAAAATTTGAGTCTCAGTATCATAAGCAGAAGCATTTAATAAATGCTCATGATATAGGACACAAATGCTcgtattgtaataaaatgttcACTAGAAATTCATTTATGAAAGACCATATTCGCCGTACACATTTGAAGGAGAAAAACGTCCCTTGTTCGGTTTGCAATGAAAGGTTCTTCGATAATCACTTACTTCGGATGCATATGGTGAAACATAAGGGCGAAAGGAAATTTATTTGTGATGTTTGTGGGAAGGCTTTTTTGAGAAGGAGCAATTTGAGTTCTCATAAAGAAATGCATAAGAAATATGGGCATGTGCCGTTGCAAGtttaa
- Protein Sequence
- MHPKNSFICDDCGITFNKKRDLSVHIRNLHRQGGYPCDQCSQICDSYFTLRQHKNNAHFYKCNNCGLRFATQKLLRKHIQIDHPESSDLKCSYCSSEFHTSQGLKQHIRKCKVRLITQVDSTNISFPVENNLGLEPKKKQNVLQIRQNIICVLNMSTAIPFQFFSKFSCFYCSQKFVEYEVLKEHTILEHPVCDLKSKCMRKCKGERITVKIDVACLACKVCCLPMPDLDSFIEHVISDHKANYDKSITCLEPHRIIKDNMPCPLCPNVTFRYFTTLLRHMNLEHNNNNRICDYCGKSFRTVTNLKVHISYTHTKSSECDDCGVKFKNQWCLSRHRAKCHNVKDFKCPKCPEKFESQYHKQKHLINAHDIGHKCSYCNKMFTRNSFMKDHIRRTHLKEKNVPCSVCNERFFDNHLLRMHMVKHKGERKFICDVCGKAFLRRSNLSSHKEMHKKYGHVPLQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -