Basic Information

Insect: Tetheella fluctuosa
Gene Symbol: -
Assembly: GCA_951216915.1
Location: OX578221.1:4020266-4031608[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.043 3.3 9.0 6.2 2 23 216 238 215 238 0.96

2 12 0.0043 0.33 12.2 0.4 3 23 247 267 245 267 0.92

3 12 3.9e-05 0.003 18.6 3.2 2 23 274 295 273 295 0.97

4 12 7.8e-06 0.0006 20.8 0.3 1 23 301 323 301 323 0.98

5 12 5.3e-05 0.0041 18.2 1.5 1 23 332 354 332 354 0.96

6 12 1e-05 0.00078 20.5 2.0 2 23 361 382 360 382 0.96

7 12 0.0066 0.51 11.6 8.9 1 23 388 410 388 410 0.97

8 12 6.7e-09 5.2e-07 30.4 1.3 1 23 416 438 416 438 0.99

9 12 2.3e-06 0.00017 22.5 1.7 1 23 444 466 444 466 0.99

10 12 0.00025 0.019 16.1 0.5 1 23 472 493 472 493 0.97

11 12 0.032 2.5 9.4 0.4 1 23 499 521 499 521 0.94

12 12 1e-05 0.00077 20.5 1.9 1 23 527 549 527 549 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.043	3.3	9.0	6.2	2	23	216	238	215	238	0.96
2	12	0.0043	0.33	12.2	0.4	3	23	247	267	245	267	0.92
3	12	3.9e-05	0.003	18.6	3.2	2	23	274	295	273	295	0.97
4	12	7.8e-06	0.0006	20.8	0.3	1	23	301	323	301	323	0.98
5	12	5.3e-05	0.0041	18.2	1.5	1	23	332	354	332	354	0.96
6	12	1e-05	0.00078	20.5	2.0	2	23	361	382	360	382	0.96
7	12	0.0066	0.51	11.6	8.9	1	23	388	410	388	410	0.97
8	12	6.7e-09	5.2e-07	30.4	1.3	1	23	416	438	416	438	0.99
9	12	2.3e-06	0.00017	22.5	1.7	1	23	444	466	444	466	0.99
10	12	0.00025	0.019	16.1	0.5	1	23	472	493	472	493	0.97
11	12	0.032	2.5	9.4	0.4	1	23	499	521	499	521	0.94
12	12	1e-05	0.00077	20.5	1.9	1	23	527	549	527	549	0.98

Sequence Information

Coding Sequence: ATGGAACTCGAGACACCTTGCATAGGAACAATACCCAAGGACGAAATACAAAATGTAGTGAATGAGGACTATGTTGAAATCGAAATACCGTTTGATCTATTTCAATACCTTAGTTCTAGTGAGTGTAATATACAGAGTGTATGTCGAATATGTCTGTCTCCTAATAATAGTGTTATGTTTGGATTGTTATCAACCAAAGAAAACAATGTTTTGGCTGAAATGTTTACAGCCTTGACATCAATTCAGGTGTTTACAGAAGATGGTCTGCCAGCATTTATTTGTGAATCTTGTCAATTTCAAGTGGTACAATGCTATGAGTTTAAAAGCAAGTGTGAGAAGTCTAATTATGCATTGAAGTCAGTGCTGAAGGGCGAATTTATTAGCAAGACTGAAAAGATTTATGAAGATGTTATaGAACCTAATGAAACAACCAAAGAAAAATTTTCAACAGATATTGAAATCAAAGAAGAGACAGAATTGCATGAAGATATTCAATATTTGGAGAATCTAGAGGATATTGGCAATGACAATCTTTGTATTGTACAGAATACTGCTAAAAgaaaaaaaAAAAAGCTAGATATTACCAATACAGATTCAAATTCACTTCTAAAAGAGTGTGTATCTGGAAAGAAAAACAAGTACCTCACATGCACACTTTGTTCTAAGAAATTCCATAAAGCAAAAACATTGCATGATCACATAAAGAAAAACCATGAAAATTCAAACGAGCTTTACGGTTGTGAGCAATGTAACCAATCATTTAGTTCTGAACATGATCTGGTGGTGCACTCGGCTTTACATTCTAAGGGTTCCACCTGGAGTTGTAATCAGTGTCACAAGGAATTTAATGCTAAGTCCACGCTACGAAGGCACATTCAAAGGCACATGGAATCGAAGCCATTCTCATGTGAGACATGCGGAAAGATGTTCGTAGAAATGTACGCGCTGCGACGCCACGTGCGCGTCCACACAGGTGAAACAGTCGAGAAAAAACATGCCTGCCATCTCTGTGATAAACGGTATAGTGAAAGTAGCCAACTAGCGGTGCACATAGCACGGCACAGCGGCTTGAGACCGTGCATGTGCACAGTGTGCGGCAAGAGCTTCCCCACGCCGCGGCACCTCGCCTCCCACCGCCTCGTGCACAACGACGCCAAGCTGCATCCCTGCCTCTACTGTGACAAGAGATTCCGTCACGAGTCGACACGGAATACTCACCACCGCACTCACACCGGGGAGAAGCCCTACGTGTGCTCCTTCTGCGGCAAGAcgttcatacaaaactccaatCTCACACTCCACATGCGGACACATACAGGTGAACGTCCATATTCGTGCAATAAATGCGATCGTAAGTTCACATCAGGGTCTTCGCTCAAAGCTCACGAGCGCACACACACAGGCGAGCGGCCTTACAGCTGTAATATTTGTGGGAAAAGGTTCGCGCGCATGAACATGAGCGCGCACATGCGGCTGCACACGGGCGAGCGGCCGCACGCGTGCGGCGCCTGCGGGAAGAGCTTCGTGTCCGCCTGGCGGCGCCGGGACCACGAGCGCATGCACACTGGTGAAAGACCATTTGAATGTGCAACCTGTGCAAAGAAGTTCCCATCGAGGTCACATCTAGTGAAGCACATCAAAACACACCAGGTTAAGAGGAATAAGGTTCCACCGAGAGACTTGGTCATTGTTCGAAATAATCTGGTATCAATTGATACTATTGGCTACAAAGATCCAAATCGGGATCAAAATACAGAGGAAACTTCAATTGCAACCAATGAAGTCATttgtgaaactatttccaataGAGATTTAGAAACTCAGGAAATTCCGATGGAGGTATCTGGGGAGTTAGTACTTCAGGAcgatagtaataataaaacagaattaTTAGTCGTCGATAACAGTAAGACAGTAGCTAATGATGTATGCTTGAATAGGATCAAtgcaattaatgaaataaattattcgaATGATGTGAATTTAGTGACGGCAAATGATGGTGGAGTGAGCATTTCTTCGTCTGCCACCATGTTGGAAGGAGCTACAGTTAAACTGTACCAATTAGACCAAAGTTTAGTGCAAATACACAGTTCTGGAGGACAAGTGACGATCAGTAAAATTACTAGTAAAATGACTGCAAACTTTTAA
Protein Sequence: MELETPCIGTIPKDEIQNVVNEDYVEIEIPFDLFQYLSSSECNIQSVCRICLSPNNSVMFGLLSTKENNVLAEMFTALTSIQVFTEDGLPAFICESCQFQVVQCYEFKSKCEKSNYALKSVLKGEFISKTEKIYEDVIEPNETTKEKFSTDIEIKEETELHEDIQYLENLEDIGNDNLCIVQNTAKRKKKKLDITNTDSNSLLKECVSGKKNKYLTCTLCSKKFHKAKTLHDHIKKNHENSNELYGCEQCNQSFSSEHDLVVHSALHSKGSTWSCNQCHKEFNAKSTLRRHIQRHMESKPFSCETCGKMFVEMYALRRHVRVHTGETVEKKHACHLCDKRYSESSQLAVHIARHSGLRPCMCTVCGKSFPTPRHLASHRLVHNDAKLHPCLYCDKRFRHESTRNTHHRTHTGEKPYVCSFCGKTFIQNSNLTLHMRTHTGERPYSCNKCDRKFTSGSSLKAHERTHTGERPYSCNICGKRFARMNMSAHMRLHTGERPHACGACGKSFVSAWRRRDHERMHTGERPFECATCAKKFPSRSHLVKHIKTHQVKRNKVPPRDLVIVRNNLVSIDTIGYKDPNRDQNTEETSIATNEVICETISNRDLETQEIPMEVSGELVLQDDSNNKTELLVVDNSKTVANDVCLNRINAINEINYSNDVNLVTANDGGVSISSSATMLEGATVKLYQLDQSLVQIHSSGGQVTISKITSKMTANF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00761901;
90% Identity: iTF_00007333;
80% Identity: -