Tocu022330.1
Basic Information
- Insect
- Tethea ocularis
- Gene Symbol
- -
- Assembly
- GCA_963555595.1
- Location
- OY741986.1:2313329-2330356[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.097 6.2 8.0 0.0 1 23 277 299 277 299 0.95 2 10 0.011 0.68 11.0 1.3 1 21 306 326 306 329 0.90 3 10 1.6 1e+02 4.1 5.1 2 23 393 414 392 414 0.94 4 10 0.028 1.8 9.7 1.9 1 23 420 443 420 443 0.97 5 10 0.096 6.2 8.0 0.3 1 17 447 463 447 472 0.93 6 10 4.2e-05 0.0027 18.5 1.2 1 23 479 502 479 502 0.98 7 10 0.026 1.7 9.8 2.2 1 20 517 536 517 541 0.90 8 10 7.7 5e+02 2.0 0.1 2 23 580 602 580 602 0.88 9 10 4.4 2.9e+02 2.7 0.9 3 23 613 632 612 632 0.92 10 10 5.6 3.6e+02 2.4 2.2 1 20 670 689 670 691 0.85
Sequence Information
- Coding Sequence
- ATGTGGGACCTAAGGGTGTGCCGAGGATGCCTGGTCACCGATACGGAGGGTAAACTGGAGCCTCTCAATAAAATGCTAAAGATGGGGTATCAAGCTTTGACGGGACTTGAAATGAAAGACGGAGATGGCTACCCAACATACTTCTGCCTTGAGTGCTGTGTACATATCAAAAAGGCCTGGGCCTTTAGAAGAAAGTCAAGAAGAGCCTTTTTTGTTATGAGGGAAATTATGATCATACGAAATGAGGTAACCATAAAGGATATACAAACAATAAATCGTGATAAAACACACTTGAATTCAACATCCAGCTActggaatttaaaaaataatacaatattcaacATAGACAATACGGAGGATGAAGAATGCTCTATGGTCAAATACACACCAGTCATAAAGAATTTAGTTTGTCACAGTATTGAAGTGATCCCAGATATCACAAACAATATTGAAGAGGATGAGGTTGAAGCAGCTTTAGAAGACACCATAGACAATGTAGATGATGCTAACGACAATGAAAATGACAATATACCAGCAGAAATAGATTTGGAAGATGTGTTTAAGGATTTAAAAGAAGAGAGTAGTGCAGAGAGTGAGTTGGAAGAGATGGAATTAATAAAAGCTGAGAAGCCTGCTGAGAAAAAAGTTGAGAAGAAAAAGGAAACAGTTCAGAATCCTTCAAAGGTTTTCAATTTTAAGGCTTTTGATATCCGGgtAAATAACGCATGTAAAGCGCTGAGCAATACGAACATAGTCGTACTATCAGATGTAGATCAAAAGAGCATGCATGTGATAAGGTCTAAGATGCACGGGTTCTTGACAGCCAAGTTTAAGTGTGCACTATGCCTTATTGTGTTCGAAAATATTAATGCATTGATGAAACATGTGGAGGACCATAAGgctTGGCAGGGCGACTACGTATGTTCTGTGTGCAAGAATAAATTTTCCACAGAAGAACAGTTGCATATACATAAGGTTGAAAATCATCTGTACGAATATACTTGCAAAATTTGTTCGCAAATAATGTATACAGTTATAGAGGTGATAAAACACAACGAGGAAAAACACCCGGAAGTGTTGAAGAGTACATTGTTTAAAATGACGTCATTGAAATCTCACTTCAAGTACATAAGATTAAAACATAATAGTATGTACGCTCACAGTACTAGTATACTATCCTGTAAGTCATGTATGAAGCATTTCAGGACTCGACATGACTTCGCTGATCATGTATCCAATCATGAAGGTAAACCACTTTACTACTGCGACATTTGCCTCAAATGTAATCGTTCAAAGGGCGGGCTTCAAGAGCACATGATCAAATTCCATTTATATAGTTATCGGTGCAAACAGTGTGCGCAAAAGTTCCCCAATAGGTCGAAACTAAACTTGATGGGGCATCAAATGTACATGCACTACAGCCAGGTGTACCTCTACGAGTGCAACTTGTGCGGACACTCGTACACTACTCTCGTCTCGCTCTACAAACACCAGATTaccatacataaatatattAGTCCCATGGACCCCATGTTAGGGGATCCTGAGCACACTTGCCGCATATGCAACTATCAGTTTTATTCAAGGAGAGCATATCAAAAACATGTCGTGCGCGCTAACCATCCGGAGGTCCTACAATTTGGCAACGCGTGCCGCCCCTGTAGGAGGCTATTCGATTCTGAAGAGCAACGCAAAAATCATGCGTGTTCCCGGACTACGCGTTTGGAATATCCCAGGGTTTGCGATTTGtgcgACCAAATATTGATTGATGATAGTGAGAGAGAGAAACATTACACGGCGTATCACCCCCAACAGAGCTACGCAAAAAGGACGCTCTGCCAGATATGTGGGAGACTCGTATCAAAGTTTCGTTACGGCAGACATATGAGGAATCACTCGGGTGACTTACTGGACAAGTACGAGTGTAGCCGATGCGATCCGGCTACTTCCTGGCCCAACGTGTACGGCTACGTGGAACATGTCATCGCGAGCCATACGCACAAACCCTACCACTGTACCGTGTGCTACGCCGCTTTTAGGTATAAAAGCGTATGCAGAGATCATATACTTAAGgAATTGGATGATCCAACTAATCATTTGATAACTGATACGTTTTTCCAACGTACTCAACCTTCGACTATGAAACGTAGAGCTCCGTATACTGGCgctaaaaaagttaaaaaacccAAGTTAAGTGTCGATGATATCAAAAAAGAAGAATGTATTGTTACAACGAGAACAGTAATATTTGATAAAAGATCTAAATCTAAAACGGGAGCAAATGAAAACAAACATGTTTTAAAAGTAGAGGAAAATGTGGCTTATGGTACAGAAGATATGGGCTATAATGAATCTGTTCTCGCGAGTGAATTTCTCGTACATAACAAAGATATTGATAAGAAAGAAGATAAGATTGACGCTTATGAGAATGGTGTTAAGGTTGACGCTTATGAGAATGATGTTATTCAATATGGAGATGATAATAATAGTGAAGTGAAAAATATATTGCCAAATATAAAGAATGAAATGGTAGGAGAATCCCAGGTTCCCGGTGTAATAGAGGAAACAATTGAACAAGAGTTAGAAGTGTTCGACATTGATGGTCAAAATTATGTAATGCTAGACGGTATTCTATATAAAGTGGAGACGGAGTag
- Protein Sequence
- MWDLRVCRGCLVTDTEGKLEPLNKMLKMGYQALTGLEMKDGDGYPTYFCLECCVHIKKAWAFRRKSRRAFFVMREIMIIRNEVTIKDIQTINRDKTHLNSTSSYWNLKNNTIFNIDNTEDEECSMVKYTPVIKNLVCHSIEVIPDITNNIEEDEVEAALEDTIDNVDDANDNENDNIPAEIDLEDVFKDLKEESSAESELEEMELIKAEKPAEKKVEKKKETVQNPSKVFNFKAFDIRVNNACKALSNTNIVVLSDVDQKSMHVIRSKMHGFLTAKFKCALCLIVFENINALMKHVEDHKAWQGDYVCSVCKNKFSTEEQLHIHKVENHLYEYTCKICSQIMYTVIEVIKHNEEKHPEVLKSTLFKMTSLKSHFKYIRLKHNSMYAHSTSILSCKSCMKHFRTRHDFADHVSNHEGKPLYYCDICLKCNRSKGGLQEHMIKFHLYSYRCKQCAQKFPNRSKLNLMGHQMYMHYSQVYLYECNLCGHSYTTLVSLYKHQITIHKYISPMDPMLGDPEHTCRICNYQFYSRRAYQKHVVRANHPEVLQFGNACRPCRRLFDSEEQRKNHACSRTTRLEYPRVCDLCDQILIDDSEREKHYTAYHPQQSYAKRTLCQICGRLVSKFRYGRHMRNHSGDLLDKYECSRCDPATSWPNVYGYVEHVIASHTHKPYHCTVCYAAFRYKSVCRDHILKELDDPTNHLITDTFFQRTQPSTMKRRAPYTGAKKVKKPKLSVDDIKKEECIVTTRTVIFDKRSKSKTGANENKHVLKVEENVAYGTEDMGYNESVLASEFLVHNKDIDKKEDKIDAYENGVKVDAYENDVIQYGDDNNSEVKNILPNIKNEMVGESQVPGVIEETIEQELEVFDIDGQNYVMLDGILYKVETE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -