Tocu022224.1
Basic Information
- Insect
- Tethea ocularis
- Gene Symbol
- -
- Assembly
- GCA_963555595.1
- Location
- OY741986.1:847600-857210[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.56 36 5.6 1.0 1 22 426 447 426 448 0.83 2 11 0.022 1.4 10.0 1.9 1 20 455 474 455 477 0.94 3 11 1.3 86 4.4 5.3 1 23 481 503 481 503 0.94 4 11 0.00086 0.055 14.4 3.5 1 23 508 531 508 531 0.95 5 11 2 1.3e+02 3.8 2.2 2 20 570 588 569 590 0.92 6 11 0.52 34 5.7 0.0 2 19 600 617 599 619 0.92 7 11 0.00013 0.0084 17.0 1.4 1 23 628 650 628 650 0.98 8 11 0.00091 0.059 14.3 1.2 2 23 668 690 667 690 0.96 9 11 0.019 1.2 10.2 2.2 1 23 696 718 696 718 0.97 10 11 0.0013 0.086 13.8 0.1 1 23 724 746 724 746 0.97 11 11 0.0026 0.17 12.9 2.8 3 23 754 775 752 775 0.93
Sequence Information
- Coding Sequence
- ATGTCCCAATTAGTTTATCTAAAAAACTCGGCCACATCCTCGTTGCGAGTGTGTCGAGGATGTCTCGCTACGGACGCTCGAATGTACGACATGCGACAGAACCGTCTGATGGAGGCCTATTCCACACTACTGAATACCGCTGTAAAAGTAACAGATGAGCTGCCACATTACTTATGCAGCTACTGCGCTACACTCCTGCTCAAGTGTGTTAAATTCAGAAATAAGTGCATTGATGCTCTGTTCATATTAAAAAATGCTCAACTTAAAAATGTACTGcAATCCACAGATTATATAATAAACAGAAGTGCGTCAAATTTCGAACGAGGTCAAACAGAAACAGTTGATATAATTAGTGAAACAATTCATATAATTAACGTAAATTTAAAACAAGAACATGATATTGATACACCTTCAGATCCTGATGACGTGAAAGATACAAATCATGTATTTGACGATCATGCAGTAACACATAGTATAAATACCGATCATGAATATGATattgaaaatcaaaataatcaaataaataaattattaaataaattcattgaaGATAAAGGTAGCCCTTTATTGAAAGACTTTGATGTTAATAAAGATGTAAGTAATGAAGATAGAATTAAAGAATTATCAGAAATTGTTAAGCATATACAGTATGCGAGTGAGACTAGTAATGAATTCTTTAATATATTGGATAATGATAGCTCAGATGTGTCTAAATATATAACTGAAACTACACAAGGCAATGTTACACATAATAAGCCGAAGAATAGAAAATCAGTAATGACTAAACAAACTAAAGGAGATGTGATAGCGAATACTATAAATGTTTCTTTAAAAGTTGAGAGTCTTACAGTATCTGATTGTAAATCAGACGTAGAGAATGAAGTTTCGAATGAGATTGCTACTCCCATACCTGAAGATAATACTACattcaatatttcaaataaaattgaagtatcAATTGAACCAATGGACAGTTCATGCGATAAAACCGAATCAAATGTAGATCTAGAAGACAATATTGCAgacatgaaaaagaaaaaaaaaactaaaagaaaatCTTCGGTTAAAGATGAACAATATGGTTTTAAAGGTTTATTGAAAATTTTGCAAAAACCCCAAAAGAAAGATAAAGGAGAAggtattagtgaaagtattaaACAGAAAGCCAAAGAATTTGAAGAGAAGTATAAATTTAATGTAACTTATTTGAGTAAGGATGAACAGATAAAGGAAATTGAGGACAGGAAAGAATCTAAGAAACATAAACAAATGAAGTTCAAATGTAATTTGTGTTACAGAGGATTTAAtaatgaagaaatatataataatcataaGGTGTTACATGATGATCTCAGCGGCAAGTTCGTTTGTGACATCTGTCAGTTTCACTTCACGAGCCCGGCAAAGGTAAAGAAACACAAATGGTCGCACAGTCAAGTGTTCACCTGCCAAGAATGCGGACACAAAACTAATCATAGTCACCTAGCGATACAGCACAGTAAATGGCACACCGGGAACAAATTCTCCTGCAAGGAATGTGGAAAAGAATTCAAAAACAACTCGAGCCGGTACGGCCATATCAAGCTGTGTCACCCAACCAGCGAGCAGCTACTGAGGTGCGAGATCTGTGAGGATTCCTTCAATGGACCCATAGGACTCAGTTATCATGACAAGAAAGCACATAAAGAGATGAGGTCACCAGAGTGTTACTGTTCTGTTTGCGAGACTCAGTTTTACTGCTCGGACGCGTTGAAGGCGCATCAAGGAACCGCCGGCCTGTGCATAACTACACACAAGTATTGTGTGCGCTGCGGTATGGCATTTGACACTGACGAACTGCTGAAGGAACATGAGATAGAGCAACGGAAGCCTCGGGATCATTTTGAATGTGAAGTGtgTAACAGGGAATTCACAAACTACACGTCCTATAATACTCACAGAGCGACGCACGGCGCGGGCCGACGGCGACGTTCGAATAACATTAAGAAATTGGGCCCCAGCATGTGTGAACTGTGTGGTGTCGTTTTTAAGaatgaCTATCTTCTGAATTTGCATCACCGCAAGACACATTTGAATCTCAAGCCGTACCAGTGCGCTAACTGCCCGAAGAGCTTCAATTGCAATATGTCGTTGAAGTTACACTCGAACGTACATACGGGCGAGCGGCCCTACAAGTGTACTATATGTTCCAAGGGCTTCGGGTCACCCGGGAATCGCGACAGACATGCTTTGGTTCACTCCGGGGAGCGTCCGCACTTGTGTAATATATGTGGAAAGAGGTTCCAGACTAGCGGCTGCGTCAAAGCTCACGTAAAATACGTTCACATGAAAGTACCCTTAAAGCCTAGGAATAGACGCAGGAAGACGACTGCAACTCaataa
- Protein Sequence
- MSQLVYLKNSATSSLRVCRGCLATDARMYDMRQNRLMEAYSTLLNTAVKVTDELPHYLCSYCATLLLKCVKFRNKCIDALFILKNAQLKNVLQSTDYIINRSASNFERGQTETVDIISETIHIINVNLKQEHDIDTPSDPDDVKDTNHVFDDHAVTHSINTDHEYDIENQNNQINKLLNKFIEDKGSPLLKDFDVNKDVSNEDRIKELSEIVKHIQYASETSNEFFNILDNDSSDVSKYITETTQGNVTHNKPKNRKSVMTKQTKGDVIANTINVSLKVESLTVSDCKSDVENEVSNEIATPIPEDNTTFNISNKIEVSIEPMDSSCDKTESNVDLEDNIADMKKKKKTKRKSSVKDEQYGFKGLLKILQKPQKKDKGEGISESIKQKAKEFEEKYKFNVTYLSKDEQIKEIEDRKESKKHKQMKFKCNLCYRGFNNEEIYNNHKVLHDDLSGKFVCDICQFHFTSPAKVKKHKWSHSQVFTCQECGHKTNHSHLAIQHSKWHTGNKFSCKECGKEFKNNSSRYGHIKLCHPTSEQLLRCEICEDSFNGPIGLSYHDKKAHKEMRSPECYCSVCETQFYCSDALKAHQGTAGLCITTHKYCVRCGMAFDTDELLKEHEIEQRKPRDHFECEVCNREFTNYTSYNTHRATHGAGRRRRSNNIKKLGPSMCELCGVVFKNDYLLNLHHRKTHLNLKPYQCANCPKSFNCNMSLKLHSNVHTGERPYKCTICSKGFGSPGNRDRHALVHSGERPHLCNICGKRFQTSGCVKAHVKYVHMKVPLKPRNRRRKTTATQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -