Tocu008281.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tethea ocularis
Gene Symbol
-
Assembly
GCA_963555595.1
Location
OY741964.1:9122097-9126426[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 6.2 4e+02 2.3 0.8 1 10 200 209 200 210 0.87
2 11 1.6 1e+02 4.1 0.5 2 23 237 258 236 258 0.94
3 11 0.024 1.5 9.9 1.8 2 23 268 290 267 290 0.95
4 11 1.3 84 4.4 0.2 7 23 303 319 298 319 0.91
5 11 0.006 0.39 11.8 1.4 1 23 324 346 324 346 0.97
6 11 2.8e-06 0.00018 22.3 0.4 1 23 352 375 352 375 0.97
7 11 5.2e-06 0.00034 21.4 1.7 2 21 382 401 381 402 0.95
8 11 0.007 0.45 11.5 3.0 1 23 409 431 409 431 0.96
9 11 0.00027 0.017 16.0 4.8 1 23 437 459 437 459 0.97
10 11 0.0076 0.49 11.4 4.2 1 23 465 487 465 487 0.96
11 11 0.085 5.5 8.1 5.4 1 19 493 511 493 516 0.90

Sequence Information

Coding Sequence
ATGTCCACATCAATAACTATACGTACTTGTCGTTTATGCCTTGATTCAAATTGTACAAGCAGTGTTTCTATGGACGAAGAAAATGGTTGGCTAAAATTGCTTGAGTTTTGTGTTGGTTTAGTTCTAACAGGGCAAGATGAACCTCGGGTACTCTGTGAGCAATGTGCTGACCAAATAGAGAATTATGTTAAGTTTAAGAAACAGTGCCAAAAATCTGATTTATTTTGGAAATCACAAATTAAATCTGATGTGCAGAAGTCTTATGAAAATTATGTTTTCGTAAAAAATGAGGATGAAGAATACTTAGCCAGTGATTTAGATTTAGATGCTGAAAATAATCATGAAATCGAAACATATTttgaggttaaaaataatatagttgaCCAAAAAATACATTATGATCAAGACTTAAATGACAATAATGATACAAAGTtccataaattaaatgaaaatgagACTAAGGAAGAGAAACACTTTAGTCCCTGTGATGAGAACAGCTCAgatgcaaaaaaaattaaacaggaagatataaaagtttttgaattaataaatgtaGAAAATTTGGAGTCAAATGAAAGTGTGGGAAATAATAGCAGTCACATATGTTCCAAATGTACTAAATCATATGgtatttgtgACTTCACCGATTTAAATATAGATGGAATAAACCAGCACCTGAATATAGTTCATTTCTCTAATAATGAGTTGAATTGCAAACTGTGTGATTTTAGGGGATATGATTTGGCTAGTATGGAAACtcatagGTTTTCTCATCAGGATAACGTTTCTAAATCGTTCATTACGTGTCACAAATGCAGTAAGAGATTTGGATCACCATTGTCACTGGAGTTTCACTATAGGTCAGTGCATTTGGGCCAACCCGGTGGCATATGCATAGTGTGCAATGATAAGggattcaataattttaaatcatgGAAAATCCATGTTAGGTCCCACCAGCTTTCCAGATATATTTGTGACCACTGTGGTAAAAAaTACCTCTATAGATATTCAATTGAAGCGCATTTGAGGGACCACTCGGATGTAAAAAACTATGTGTGTGATGAATGTGGCAAACGCTTTAAGCGGATGTATGGATTGAAGCTTCACGTATCGACTGTGCACGTGAAAACAGAACCGTTAAAGTGCACCCattgtaacaaaatattcaaaagcCCTCAAAGTCTAGAAAAACACATGAAGTATGTGTCCGCGGAGAAAATTTTCCAATGCCAAATGTGCTCCAAGTGTTTTGGATCTCAAAAGATTTTGAATAACCATATATTTTGGCATAGTGAGGAAAGACCGCACTGTTGCGATGTTTGCGGCTCAAGTTATAAAGCTAAAAGTCAATTGAAATTGCATATGAGGAAGCATACTGGGCAAAAGCCATATCATTGTCTACAGTGCTATAAGAAATTCCATACACCTGGACTATTGAAGAGGCATGGTAGTGTACATACAGGGGTTCGACCATTCAAGTGTTTGCATTGCGAGAAAACGTTTTATAGTAACTCAGCTAGGCAAGTGCACTGCGCGAAACGACATAAAGACAGGTGA
Protein Sequence
MSTSITIRTCRLCLDSNCTSSVSMDEENGWLKLLEFCVGLVLTGQDEPRVLCEQCADQIENYVKFKKQCQKSDLFWKSQIKSDVQKSYENYVFVKNEDEEYLASDLDLDAENNHEIETYFEVKNNIVDQKIHYDQDLNDNNDTKFHKLNENETKEEKHFSPCDENSSDAKKIKQEDIKVFELINVENLESNESVGNNSSHICSKCTKSYGICDFTDLNIDGINQHLNIVHFSNNELNCKLCDFRGYDLASMETHRFSHQDNVSKSFITCHKCSKRFGSPLSLEFHYRSVHLGQPGGICIVCNDKGFNNFKSWKIHVRSHQLSRYICDHCGKKYLYRYSIEAHLRDHSDVKNYVCDECGKRFKRMYGLKLHVSTVHVKTEPLKCTHCNKIFKSPQSLEKHMKYVSAEKIFQCQMCSKCFGSQKILNNHIFWHSEERPHCCDVCGSSYKAKSQLKLHMRKHTGQKPYHCLQCYKKFHTPGLLKRHGSVHTGVRPFKCLHCEKTFYSNSARQVHCAKRHKDR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-