Tocu022274.1
Basic Information
- Insect
- Tethea ocularis
- Gene Symbol
- -
- Assembly
- GCA_963555595.1
- Location
- OY741986.1:1548593-1560426[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0096 0.62 11.1 0.6 1 23 226 248 226 248 0.98 2 11 0.00049 0.032 15.2 3.8 1 23 255 277 255 277 0.96 3 11 0.39 25 6.1 2.0 1 23 281 303 281 303 0.91 4 11 0.00017 0.011 16.7 1.4 1 23 308 331 308 331 0.98 5 11 0.0013 0.084 13.8 0.2 1 23 335 358 335 358 0.94 6 11 0.27 17 6.6 0.2 5 21 374 390 371 395 0.89 7 11 0.4 26 6.0 0.3 2 23 438 460 437 460 0.95 8 11 0.0067 0.43 11.6 0.1 2 19 476 493 475 497 0.92 9 11 0.00032 0.021 15.7 1.3 1 23 503 525 503 525 0.98 10 11 0.0014 0.087 13.8 3.2 3 23 537 557 536 557 0.97 11 11 8e-05 0.0052 17.7 4.3 1 23 563 586 563 586 0.95
Sequence Information
- Coding Sequence
- ATGTTTACAAGACACAATAAATCAAAACCTGTGCCTGAATTACAGGTATGCAGAATATGTCTATCAACAGATAGAAACTTCTATGACATCAATAAACACAATCTACTTGAGTACTTTGAACAAATCATAGGAATAAATATGAGTGCCGAAGACAGACTACCACAGAAGGTATGTTGGGAGTGTGGACACAGACTGTGGACATTGTCTTGCTTCAGGAGCAAGGCTCTGCGGAGTCACCAGCTTATGCTGGATATGCTGCATGGAGGACAATATCTAACAAAAGAAACTATCGTATCAATCGATCGAGAATCTCATAACCTAATCTCAAACTTAACTCATACACATTACGATACAAATTACAATGATCTACATCTACATGATACAtctgaaaataatgaaattatacctatacaagaagtaaatattcatgaaattaaaGTAGAAAATGATAGCGATTTCAACGTAGAGGGAGCATCGACATGTTCCAGTGACATAGTACTAgcgaaacataaaaaaataaagaaaaaaaataaagaagtaaAGGTAGATAGGCGCAGAAAACCTGCAAATGAAGTTCTAAATGAAACAATATTCGAAATTACTGATCTATCATATAAAGAACAAGTTATGGAAATTGAGAAAAGACAAGATAGCGCTAATTATAGGAATTCTGAGTTTAAGTGCAAGGAGTGTTTTAAAGGTTTTCTAGATGAGGAGGCTTTTAAGGGACATATGATTAGACATACTGATCAAAGTGGTACATATGAGTgtaaaatatgcaaaataagGTTCAAGAAACAACATGCGTTAAGAAATCACTCTACATCGCATATGCAGAAGTTTAGTTGTAAAAGATGTCCGTATGTCACCACGAGAAGGCACGCAGCGAAATTACATGAAGAGTTCCATAACGGTACCAGATATCAGTGTCCACATTGCCAAGAAGACTTTGTtaaaatatCAACGTACATGAGCCATATCCGGATTAAACACCCGTCAGACTTCGTGTGCGAACTGTGCGGGTACTCCTTCGTCAGTGCTAAGGGTTTAGGACTACATAAAAAGCTGAAACATCGCTTTGATGAACAACCGGTGCCAGAAGATGGGCCGTCTTGTATCGAGTGTGAAGTCAGATTCGTTACTAAAGAAGCTCTGGACAGACATCTCAAGTTATCTGCTAGACACAATGATGACAAagaTAGCACAAGAAAACGCTCTCGTAGGCCAAGAGAAATGCAAGACAAAGACAAGACGCAAAAAGAGACGGAAAATAAGAAACGAAGGAACAATTGCAAACCAGAGGGACCGATACCTTGTGAACAGtGTGACATGCAGCTGCCAGATTCGTTATCCTACTACAGGCACTTCCGGCGCACTCATCCGGAcaagaatcgaacccactaccccTCGATGAAGACGAAGAGTATGTGCGAAGTTTGCGGAAAAATGTTTcagAGTCTAGCCCTCCTACAAGACCACAGCTGGACTCATACAGGCCATAAGCAGTTCTCATGCAGCACGTGTGGCAAGCTGTTCCAGCGGAAATACCGGCTTATAGCTCATAGCCGCGTGCACCGGCCTACTCCCGGGGGTACTGCCACGCACGGCTGCCGGCTCTGTGCCAAGCGGTTCACTACCGCTAGCAACATGCATCGCCATATGTTTAGTCACACAGGACTGAAACCGTTCAAATGTGAAATGTGCGGGAAATGCTTCAAACACGCCAGCGAGAAGAGAGTCCATATAACATACGTACATCTGAAGAAACCCTGGCCGAAACGGACTAGAGGCAAACGGAGGGACGCCAGACAGGTACAGATCCCGACGCAACCTTCGAATACGTTAGGTACAGACGTGGACATAGTGCAGCCGCTGTGGCCCGCCTGCAACGATCCTAAAATAGGCGATATACTCATGGACGACAAAGCTATGTATTATAGAtcataa
- Protein Sequence
- MFTRHNKSKPVPELQVCRICLSTDRNFYDINKHNLLEYFEQIIGINMSAEDRLPQKVCWECGHRLWTLSCFRSKALRSHQLMLDMLHGGQYLTKETIVSIDRESHNLISNLTHTHYDTNYNDLHLHDTSENNEIIPIQEVNIHEIKVENDSDFNVEGASTCSSDIVLAKHKKIKKKNKEVKVDRRRKPANEVLNETIFEITDLSYKEQVMEIEKRQDSANYRNSEFKCKECFKGFLDEEAFKGHMIRHTDQSGTYECKICKIRFKKQHALRNHSTSHMQKFSCKRCPYVTTRRHAAKLHEEFHNGTRYQCPHCQEDFVKISTYMSHIRIKHPSDFVCELCGYSFVSAKGLGLHKKLKHRFDEQPVPEDGPSCIECEVRFVTKEALDRHLKLSARHNDDKDSTRKRSRRPREMQDKDKTQKETENKKRRNNCKPEGPIPCEQCDMQLPDSLSYYRHFRRTHPDKNRTHYPSMKTKSMCEVCGKMFQSLALLQDHSWTHTGHKQFSCSTCGKLFQRKYRLIAHSRVHRPTPGGTATHGCRLCAKRFTTASNMHRHMFSHTGLKPFKCEMCGKCFKHASEKRVHITYVHLKKPWPKRTRGKRRDARQVQIPTQPSNTLGTDVDIVQPLWPACNDPKIGDILMDDKAMYYRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01252176;
- 90% Identity
- -
- 80% Identity
- -