Tocu008246.1
Basic Information
- Insect
- Tethea ocularis
- Gene Symbol
- -
- Assembly
- GCA_963555595.1
- Location
- OY741964.1:8568484-8572165[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0013 0.084 13.8 0.0 5 23 140 158 138 158 0.96 2 11 0.11 7.2 7.8 1.9 2 23 163 184 162 184 0.97 3 11 0.027 1.7 9.7 3.0 2 23 191 213 190 213 0.94 4 11 0.00011 0.0072 17.2 0.4 3 20 222 239 220 243 0.93 5 11 9.8e-05 0.0063 17.4 1.5 1 23 248 270 248 270 0.98 6 11 0.26 17 6.6 4.5 1 23 276 299 276 299 0.96 7 11 6.4 4.1e+02 2.2 3.8 2 14 305 317 304 325 0.84 8 11 1.2 77 4.5 2.4 2 23 331 351 330 351 0.85 9 11 2.7e-05 0.0017 19.2 0.3 1 23 357 379 357 379 0.98 10 11 0.001 0.064 14.2 2.1 2 23 386 407 385 407 0.97 11 11 6.9e-08 4.4e-06 27.3 1.5 1 23 413 435 413 435 0.99
Sequence Information
- Coding Sequence
- ATGGAAATGTGTCGAGCTTGTTTATCAACAAAAGAAAAGCTGGTCCCATTAGATGAAACTTTCATACTAAACTATAACCTGCTAACAAATCTCAGTATTTCAACCTTTGATAACATGCCTCAGTATTCATGTGAAACTTGCCTGGATACTATCCATAGCTTTATAAATTTCAGAGAGAAATCAATTTCATCAGAAATGATGCTAAAGGATCTCTTACTGGCGAATATAAaaccagaaaaaaaaagttcacattctagtaatgtaaataaaatatcagcaGAAAATACCAGTACAGCAATTGTAATTGATATAAAACACGAAATCAAAGAAGAGGAAAATGAAGACTATTCAGGATTTGATGAATCATTTGATTGTAATGATGACATGAGTTTGTTGATTGTTAGAAAGAGTAaagGTATATGCCCAAAGACATTTGAAGAAAGAAGTGCATTGAACAGTCACATAGAAAGTCATAAAAATCATAAGCAGTGTTGCATTTGCTTTGAAAACTTTGACAATTGGTTCCAATTGCTTCCGCATAGACTGACTCATGTCCCCGAAAAGCAGAAGAAGTGTCACATTTGTTTAAAAAGATTCTGTGAACCCCCCTACTTAGAATATCACTATGTGAAAATTCATTTTGGAGGGATTCCTAAGTTAGCATGCAATGATTGTCCGAAAACATTTGAAAATcctagaaaattaaaaaatcatcggTGGAGTGTGCACCAAGAACTCAAGTATTTTTGTGACTTTTGTGAGAAAGGATTTGGTGTTAAATCCTCTCTAAGGTCGCATCTTAAAAAACATAGCGAAAAGAAAACATTTGTATGCGACCTGTGTGAATACTCATCGAAAACACATTGTGGATTAAAGGAGCACAAAATAAGGAAACATTCTGCCTTCAAAATCTATTGCAAAAATTGTCAAAGGGTGTTCGATTCTCAAGAGGTCTGTGATAAGCATAGATGCAAAGAATTATCATACGTCGTATGTCCCATTTGTGGAGTGCGTAAGCTAAGTAAAAATTTGAATAAGCATATTGAAAAACACAGTGACATCAGCAAGTATGAATGTAACAGATGTCCAGCAAAGTTCAAAACCCAAGGCGGTCTGAAAGCACATTTGGATAGACACGATGGCAACCGCACTAAGGAATGTGAATACTGCCATGCTAAGTTTTATACTGGATCCGTACTTATTAAACATCGACGTACGCATACAGgcGAGAAACCGTATGTGTGCAAAATCTGCCAAAAAGCGTTTACAGGCAATCACAACCTCAAAGTTCACATGAGAGTTCATGGCGAGtacttaataaataagaaaGATAAAATAGCTGAGAGTTAG
- Protein Sequence
- MEMCRACLSTKEKLVPLDETFILNYNLLTNLSISTFDNMPQYSCETCLDTIHSFINFREKSISSEMMLKDLLLANIKPEKKSSHSSNVNKISAENTSTAIVIDIKHEIKEEENEDYSGFDESFDCNDDMSLLIVRKSKGICPKTFEERSALNSHIESHKNHKQCCICFENFDNWFQLLPHRLTHVPEKQKKCHICLKRFCEPPYLEYHYVKIHFGGIPKLACNDCPKTFENPRKLKNHRWSVHQELKYFCDFCEKGFGVKSSLRSHLKKHSEKKTFVCDLCEYSSKTHCGLKEHKIRKHSAFKIYCKNCQRVFDSQEVCDKHRCKELSYVVCPICGVRKLSKNLNKHIEKHSDISKYECNRCPAKFKTQGGLKAHLDRHDGNRTKECEYCHAKFYTGSVLIKHRRTHTGEKPYVCKICQKAFTGNHNLKVHMRVHGEYLINKKDKIAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -