Tocu014226.1
Basic Information
- Insect
- Tethea ocularis
- Gene Symbol
- -
- Assembly
- GCA_963555595.1
- Location
- OY741972.1:9791005-9795009[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0011 0.074 14.0 1.5 1 23 299 322 299 322 0.96 2 11 0.017 1.1 10.4 1.9 1 19 337 355 337 359 0.88 3 11 1.5e-05 0.00096 20.0 2.8 2 23 365 386 364 386 0.97 4 11 0.016 1 10.4 2.0 1 23 390 413 390 413 0.97 5 11 0.018 1.2 10.2 0.6 1 23 416 438 416 438 0.97 6 11 0.00036 0.023 15.6 0.3 3 23 518 538 517 538 0.96 7 11 1.7 1.1e+02 4.0 1.2 1 23 557 580 557 580 0.95 8 11 1.1e-06 7.2e-05 23.5 4.1 1 23 586 608 586 608 0.98 9 11 9.5e-05 0.0061 17.4 3.0 1 23 613 635 613 635 0.97 10 11 0.0044 0.28 12.2 5.7 2 21 642 661 641 664 0.94 11 11 0.011 0.71 10.9 1.4 3 19 704 720 703 721 0.97
Sequence Information
- Coding Sequence
- atggATCAGAGTACCGCCCGTTCTGCAAGCGACAGCGAAGAGCTGTATCCATTCCTACTCATACCAAGAAAGTGTACAGCCCTTGAAACTAACTGTAACACGTCTGAAAACGTATTTATTGACGTGAACGTAACTTCTGTAGACACTGATGGTAACGAGCTATGTATTTATTCGGgattttgtaatataaaactCATAGACAACTACAATATAGACATAAACGAAGAACAGAATGAAAACttatatgaaaatgatttaCCAGTGATCATTTCAGAGGGCAACCAGATAAGCTATCCATCTTATAATCAGTCTCAGGTGTGGATAGACCCAGCGAGGAGTCCCTATGTGTACAATAACTATGATATGATGAATCCCTCAGAACATTACTCCGTATACCATCAAACGGCACCGGGGCACATAACAGTTGAACAACACAATACGTACATAATGCAGAATGTGTACAATGAAAATGTACAATATTCAGTACCTGAAGACGTAGAacacaaaaaatacactaaGACACAAGAGGCTCAGAATACGGAGATGAATTATAATTCATATGAAGAAGATGAGTTTGAATGTGGAGTATTTCTGTCTCAGCTGCCCGAGGAAATAATGAATGAGAAGGAAAATAAGGCTAGAGAGGAAAGGAAGTATATTGGGCTGCAGAGTGATAATGGTGCGTTGAAACAGCTCATGTCTTCGGATATTCAGTCCATGTCGAAGCAACGTAGGACTATACTGTTTTTAGGTCATAGTTCACAGACCGGGCAAACAATTCAGAATATTGTAGTGAATGATCCCATGTTGGAGTGCTCGGGTAACGGTGAGGTTGAAAATGAAATTACTATTGGTGAAGACTCAAACCCACCGACAAATCCGCACCAGAAAAAATACCAATGTGACAAATGCAAAcaaatatttgatcaaataactTCATTCAAGCAACATATGGTCTCCAACCATAGATCAGTTGTATTTGACCAAAACTCCAAAACCGAAGTTAAATTCCTATGCACGGAATGtggaaaaactttaaaaaaccaGGAAAAGTTTGAAATACACTGCATGGGCCATGGCGATCCAGACTTAGAATGCAATAAGTGCCACAAAGTGTTCGCATCAAAGTTCACCTTACGCGCCCACCGTAAGATTCATACTCGCAAACATGTTTGCCACCTCTGCATTAGGGCATATGCGACCACAGAAGAGTTAAGGAGTCACATGCAGAAGatgcattattatttttcttgtgACTTATGTTCTTTTGTCGCCAAGAAGTTCTCTGAATTGTCAAGACATCAAGAAGTTCATATGGAAAGCGATACTAACTCTATTGATTGTAATGGTAGCGAGACTGATATCATTACTCCGTCTCCTGAAGGGCACGGATTGGAGTCTGATAATGGTACAGAACTTAACGATGTGATACAGCCTCGATATGATCAGATCAGCGATGCAGATTCTGTGATAGCTAAAGTCATGTCCAATAAGATTTTTCTGCTCCACGCTAAGAAAGTTACTAAGAGACATAGAAGACAAAATAAGGCGTGTGACGTGTGCTTCAAAAATTTCGAACGCATCAGCGATCTAAAACGTCACTTAATCGAACATATAATAAAGAGCACGCTATCAAAGACACCAGTGAATCACGACGGAACCCTAGCCTTCGAGTGCGAGGTATGTCACAATGAAATCTTCTACAAAATCGACCGGTACAAAGCTCATTTGCGCGAACATGCCAAACTAACCCTCTACAAATGCACATTCTGCGACAAATCATTCAGCGACTCCAGTAATTTTTCAAAACACAAGAAAATTCACGGCACCACATTCTTCCAATGCGATATGTGCCGTAGGAAATTCAACTCTAAAAAGACGTTGACACAGCACATAGAATACCATAACAATAACTCCCCAATACAGTGCCACTATTGCGATAAGATTTTTCATTTTGAATCTATGCTAAATAAGCATATAAAATGTAcgcataaaaaggaaattatgTCGAAGTTCAGATGTAAGTTCTGTCACAGTTACTTTAGGGCTTTGAAAGATAAATGGGATCACGAATGGTCGGTTCATAACGTTAGGAAGATGATCGTGGATTGTCTGATCTGTGGTGCGAAATTTAGGAAATATTCAGAGCTAAAACGCCATTGTGTTGATAGGCATAAACTTGATATTCCACCAGCTAAGAACCTGTTAAGGGGAAAAAAGTAG
- Protein Sequence
- MDQSTARSASDSEELYPFLLIPRKCTALETNCNTSENVFIDVNVTSVDTDGNELCIYSGFCNIKLIDNYNIDINEEQNENLYENDLPVIISEGNQISYPSYNQSQVWIDPARSPYVYNNYDMMNPSEHYSVYHQTAPGHITVEQHNTYIMQNVYNENVQYSVPEDVEHKKYTKTQEAQNTEMNYNSYEEDEFECGVFLSQLPEEIMNEKENKAREERKYIGLQSDNGALKQLMSSDIQSMSKQRRTILFLGHSSQTGQTIQNIVVNDPMLECSGNGEVENEITIGEDSNPPTNPHQKKYQCDKCKQIFDQITSFKQHMVSNHRSVVFDQNSKTEVKFLCTECGKTLKNQEKFEIHCMGHGDPDLECNKCHKVFASKFTLRAHRKIHTRKHVCHLCIRAYATTEELRSHMQKMHYYFSCDLCSFVAKKFSELSRHQEVHMESDTNSIDCNGSETDIITPSPEGHGLESDNGTELNDVIQPRYDQISDADSVIAKVMSNKIFLLHAKKVTKRHRRQNKACDVCFKNFERISDLKRHLIEHIIKSTLSKTPVNHDGTLAFECEVCHNEIFYKIDRYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGTTFFQCDMCRRKFNSKKTLTQHIEYHNNNSPIQCHYCDKIFHFESMLNKHIKCTHKKEIMSKFRCKFCHSYFRALKDKWDHEWSVHNVRKMIVDCLICGAKFRKYSELKRHCVDRHKLDIPPAKNLLRGKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00762000;
- 90% Identity
- -
- 80% Identity
- -