Tocu020397.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tethea ocularis
Gene Symbol
-
Assembly
GCA_963555595.1
Location
OY741982.1:6563425-6566296[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00023 0.015 16.2 2.6 1 23 212 234 212 234 0.97
2 16 5.3 3.4e+02 2.5 0.5 2 23 238 259 237 259 0.80
3 16 0.00033 0.022 15.7 0.8 1 23 264 287 264 287 0.97
4 16 0.001 0.065 14.2 2.0 2 23 346 368 346 368 0.97
5 16 0.00076 0.049 14.6 4.3 1 23 374 397 374 397 0.94
6 16 0.0036 0.23 12.5 0.2 1 23 430 453 430 453 0.96
7 16 4.1 2.6e+02 2.9 0.2 1 23 458 481 458 481 0.93
8 16 0.00012 0.0074 17.2 0.3 2 23 494 515 493 515 0.97
9 16 0.0045 0.29 12.1 0.8 1 23 521 543 521 543 0.98
10 16 0.11 7.1 7.8 0.1 2 23 549 569 548 569 0.95
11 16 0.0019 0.12 13.3 1.1 2 23 577 598 576 598 0.97
12 16 0.12 7.9 7.6 0.1 2 23 603 623 602 623 0.94
13 16 5.8e-05 0.0037 18.1 3.1 1 23 670 692 670 692 0.98
14 16 8.5e-06 0.00055 20.7 1.2 2 23 699 720 698 720 0.97
15 16 0.00088 0.057 14.4 0.4 1 23 726 749 726 749 0.93
16 16 0.31 20 6.4 0.8 3 23 756 777 755 777 0.96

Sequence Information

Coding Sequence
ATGGAGGAACTTGAATCAAATGAATACATATTTGAAAACGATTCCCAACCTAATGTAGACGATATGAAgcgtaaaataaacaatttaattaaccTAGAGCACTACTGTGGAATATGTTTAGAGGACAGCAACAACATGTTCTCTATAGATGAagatttgataataataattcagcAATGGACACAGCATGTTTCTTTGAAGGATATTATTTACAAAGTGTTTTCTAATAATCCACAAATCTTAGCCAGTAATACGATCTGCAGTAATTGTATAACTAAGTTGCGGCAGTcttatattttcattcaaaatactGAAAATGTATCAAGAACTATGAACGCCTATATTAATGACTTATACAATAAGGTAGAAGACATAAACAATTATTCTGGAATCACCAGAGAGGACAGCtgcaatattgttattatgttaGATTCTAAAATAGATTgtctaatatatttaaataagttagAAAGTGGTACAAAAGATATGATTGCTGAAAATAATGATTTGTCAAAAACAACTCTAAATGAAAAAGCCAAAGAAAACACATTCCAATGTGTagaatgtaatattttactACCCACTTTTCGAGCTTGGAAAAGACATGACAGTAAATATCATACAAATGAAAATCATGAATGCAAAATATGCATGAAATCATTCAAAACTCAACAGTATTTAGTGGCACATTACAAAGTGCATGCCAAAGTGGTATGCAAGATTTGTCACCAAATTACACCTGATGCCGGACTAAAagagcatttaaaaaaataccataaagaAAATGCACATGTATGTAATATTTGTAATGAGGCATACTATTCGTCAAAAGCACTTGATACACATATGAAAATCTTCcatgaaaatataaaaggaaGCAATCAATGTGTTATGTGTCTAAAAGATTATAGAGATGGTAAATTAAAAGCACATAATTGTAAATTCAACTGTTCTGAATGTTCAGACATGCCTTGCGTccattataagtatttaatgttttatagaGAACAAATCCTTAACCATGCAAGCAGAGCAAAGTGCTTGGACTGCGATTATGTCTGCCGTAAGAGGGATAACTTATTGGCACATGTAAATCGCAGGCACTTGGATAATCATCAGTATACTTGCGACAAATGCGGCCAGCAGTTTTATTCCAAAACCTTATTGAAATCTCACatttatcattttcatttagATACTTTCACATGTGCATTTTGTGACAGCAAATTTTACAACCTAGAAGCCCATCATAGTCATGAGCAATgctgtaaattaataacaagagAATTTATATGTGCAGGATGTCCAGCATCATTTGATAGCACAGAACAATTGATGGACCACAAAAAGCGTCGACATTGCAAGGAAATATATCCATGTGGCTTATGCAGTAAGGAATTACTGACGGAATCTAAGAGAAAAGAACACATGATCAAGGTTCACAGTGgtgttcaaattaaaaatcgaCATTTGAATCTTAAATGTGTAATTTGCGAGGACAAATTTGATACTAAAGGTGAATTGGTACGACATATGAGAACACACGGGCCTCAAGTTAAATATCCTTGTAGAGTATGCAATACAGAATATGAGAGTCTTAGAAAACTTAGAGCTCATAGTAGAAAACATAATGGCCCATTTGTAGTCTGCGAAATATGCGGGAAAGAGATGAGAAAAGTTTTACTTGATAAGCACATGTCCAACCACGCGTCCATGGGCGAAATAGTCACATGCGATACGTGCGGAaagtcttttttaaatataaaacagttaAAATACCATCGGAAAGTCCATTTAGATAGTGTCCCTTGTCCTAAATGCAAGAAACTAATCAACCCGGCAAAGTTAAGAAGACATTGGAGAGGTCACATGATGGACGAAGACCCGAAATTAAAAGAAAGTAAAAAACAGAAACCAAATCTAAAATGCGAATTGTGCGATTATATGACATGGAATAATATATTACTGGAATGTCATATGAATAGAcaccatttaaaaataaagccaTACATATGTCATATATGCAGTAAAGATTTCATCGGGAAACATTTGTTGAAGAAACACATAGAAACCCATAACGATGATAAGAGTGTTAAATGCATGATTTGTGGGAAAAGCTTCGCTAATTCCGCATGTTTGAAAATGCATTTACGGCTGCATACGGGCGAAACGCCGTATCCTTGTGATATTTGCGGGCAGAGCTTTAGATCTTCAAGCATTATGAACGTGCATAAACTGAAGAAGCATTCGGAAAGGAGTAATCTATGTCCCCTTTGTCCGAgcaaatttcatacaataagAGATATGAGGAGGCACGTAATAAAAGTGCATTGGAAACAGAAAAATAAGAGATTTGATCCGCGAGAACTGAAAGGCTTACACAAAGAACATTATCATTTATTTCATGATGGTAGAAGAGTTAAAATCGATGAGAGAGAAGTGGAATTTTTTCACCGTTAA
Protein Sequence
MEELESNEYIFENDSQPNVDDMKRKINNLINLEHYCGICLEDSNNMFSIDEDLIIIIQQWTQHVSLKDIIYKVFSNNPQILASNTICSNCITKLRQSYIFIQNTENVSRTMNAYINDLYNKVEDINNYSGITREDSCNIVIMLDSKIDCLIYLNKLESGTKDMIAENNDLSKTTLNEKAKENTFQCVECNILLPTFRAWKRHDSKYHTNENHECKICMKSFKTQQYLVAHYKVHAKVVCKICHQITPDAGLKEHLKKYHKENAHVCNICNEAYYSSKALDTHMKIFHENIKGSNQCVMCLKDYRDGKLKAHNCKFNCSECSDMPCVHYKYLMFYREQILNHASRAKCLDCDYVCRKRDNLLAHVNRRHLDNHQYTCDKCGQQFYSKTLLKSHIYHFHLDTFTCAFCDSKFYNLEAHHSHEQCCKLITREFICAGCPASFDSTEQLMDHKKRRHCKEIYPCGLCSKELLTESKRKEHMIKVHSGVQIKNRHLNLKCVICEDKFDTKGELVRHMRTHGPQVKYPCRVCNTEYESLRKLRAHSRKHNGPFVVCEICGKEMRKVLLDKHMSNHASMGEIVTCDTCGKSFLNIKQLKYHRKVHLDSVPCPKCKKLINPAKLRRHWRGHMMDEDPKLKESKKQKPNLKCELCDYMTWNNILLECHMNRHHLKIKPYICHICSKDFIGKHLLKKHIETHNDDKSVKCMICGKSFANSACLKMHLRLHTGETPYPCDICGQSFRSSSIMNVHKLKKHSERSNLCPLCPSKFHTIRDMRRHVIKVHWKQKNKRFDPRELKGLHKEHYHLFHDGRRVKIDEREVEFFHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-