Tocu021459.1
Basic Information
- Insect
- Tethea ocularis
- Gene Symbol
- -
- Assembly
- GCA_963555595.1
- Location
- OY741985.1:1144873-1156587[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.26 16 6.6 0.3 3 23 126 146 124 146 0.96 2 14 6.3e-06 0.00041 21.1 1.1 1 23 270 293 270 293 0.97 3 14 0.012 0.74 10.9 5.6 1 23 298 321 298 321 0.93 4 14 0.00016 0.01 16.8 0.5 2 23 489 510 488 510 0.97 5 14 8.8e-05 0.0057 17.5 2.4 1 23 516 538 516 538 0.98 6 14 1.9 1.2e+02 3.9 7.2 1 23 603 625 603 625 0.96 7 14 0.0018 0.11 13.4 0.2 2 23 633 654 632 654 0.97 8 14 0.027 1.7 9.7 5.0 1 23 660 682 660 682 0.95 9 14 0.0011 0.068 14.1 2.1 1 23 688 710 688 710 0.97 10 14 0.0022 0.14 13.1 2.3 1 23 719 741 719 741 0.98 11 14 0.00015 0.0096 16.8 0.6 2 23 788 809 788 809 0.97 12 14 0.0031 0.2 12.7 4.7 1 23 826 848 826 848 0.97 13 14 2.7e-06 0.00018 22.3 0.9 1 23 854 876 854 876 0.98 14 14 6.2e-07 4e-05 24.3 3.1 1 23 882 905 882 905 0.98
Sequence Information
- Coding Sequence
- ATGAATAATCTAGCTATTGATGTTGATCCGTTAAGTAGCTTCGAGTACCCACAATATAATCCATATCCAAATAACGAGTACTCGTACAATTTAAAAGCTGAGGAGCCAAATATCACATACAAGTATGAAATGTTCCCCATTACCCAAGAAACTGGGAATAATATGCATACACATGAAGTTCCTATAACAAATTTACAGAACAATGAAATCCCgattgaaaatgtaaaaaatgtcCAAGAACAACCTAAAAATCAAGAACAAGAAGATATTAAACCTATTATAGTTGGGAATAAGATTAAAAAGGAACGTACTAAAGGGAGAACAAGCAATTATTGGTCCGTGAAGATTACGGACAAGGATTTTGCGTTCTATGGTTGTGCAGTATGCAATATACAGTACAAATCGTTGCATGAGTTAGACCAACATGTAACTATCCATAAAGATAGGATAACTAGCTACGATTTGAGGATAAAGAATCAAATGTTGAagaagattaaaaataaaaaagttaagaaAGTGAAGGAGGAAATCGTTCCGAAATTGGAAATTGATATTAAACCAGAAGACGGTTATATTGGTAATGAAAAAGCTTCGGATTTTggtcaaaataatgaaaatgcaCAAGAGAATGATGTGATGGCAAATGATGATGGAGACGCATCAAAAAGTGAggtcaaaaaagatatacaagGAAAGAAAAAGGAGTATAACATGGAAAAGATTTACAAATGTTTTTGCTGCCAGAAACAGTTTCTTTTGAGCTATTATTTGAAATTACATGTGAGGTCGCATACagATGAAAAGCCGTATACTTGCAGTATCTGTGGACAATCGTTTATAACTGCTAGTCACCTCGGCAGACACAACAAAAGGATCCATCTAGCTGTAAAGCATCAATGTCGAATATGCTACAAGTTCTTTTCTAGatTCGAACTACTAACCCGTCACTTTGATAAAAAGCATCCTGATGACAAACTAGAAGGCGAACCATACGATTACAACGTAATATTGCCATATTTAAAAGAATTGGAAGAACAATTGCGTCAGAAATCTGAAGATGATAAGAAACCCAAAACGGAAGATCTATGGGGTGACAAGTGGCCTTTAGAAGAACCTTCGGCGATCCAAGAAAATCAGGATGATAAGCACCAAGATTTAGACAACAAAGATTTCGATCCCCCCCTCTTACCACCGGAAAATGTAACAGTTGAACGCGTTACTATTTCTGAGGACTTATTAGAAACTCAAATAAAACTTGAGGTTGAAGAAATTCCGGAGGCCGTTATGGAACCGGAGGCCGAAGGGGCCTGTGATGATGCAGGAGACGATAGCGTCAAGGATGAGAgCTGTTCCGACGACGATTACTTCCCATCGAACACCTGGGCGGCGACACCTAAAATAGAACATCCCCCCCCATCGCCCCCTCGTACAACCCGCCGCAAGAAGTCCGACGAGCGCACGCTACAATGCGACGTGTGCCAAAAGACAATAAGTTCAATATCGTACATGCGCGTGCATATGCGCACTCATACGGGCGAGAGGCCGTTTAAATGTTATGTTTGCGGTCGCGGGTTTATTACCAGTAGCAAGATGCACAGACACGTGTTGACGCACAGCGAGACTTGGGATGacAGTGGAAGCGTGAATGATACAAAGAAGAATATCAAATCGGAAAATGACACAAATGATAATGGTGAAGAGAAATCTGATAAAGAaTCGCGTCTTAAAAAATCTAAAGCCAAGTTCGCAAAGAAACGCATGAAGGGACCAAAAGTTGATAGACCAAAGAAGTATCAAAAACGACTTCATGCTTGTGAATTTTGTCAtaaaagaTTTCTTCACATGGAGACATTGCAAGTTCATAAGAAATCCCATGAAGGTGAAGAGCTGGTGATCAAATGTACATATTGTTTGGAAAAATTTGATGATGAAGCGGAATTGAGGCAGCACGAGTTAACACATGATGGGCCTAAGCCGTTTTTATGTACTCTATGCGGGAAGACCTACAAGAAACGGGAGACTATGATGTATCACAGAAAACATCATAAAGCAGTGAAAGAATTCGAGTGCGCTATATGTCAGAAGCGCTTTAACGCGCAGTGTAAGCTGCAGCGACACGTGGTGACCCACGGGGTAGACAAATACGTGCTGCGATACGAGTGCCCCGTCTGTGCCCACATGTTCAACACTAAGTACCATATACAGATGCATTTGGTGACCCACCAGAAGGAGGGGCTAATCGTCGAAGAAAATCGCAACGAAATTCTAGCGATGGTGTTACAAAATGCAAGAAAAATCCCCAAAGGCCCCGACTCGTCCGCCAACGTCCCAGACATTATACCAGCGGACGAACGAAGCCGCGTGTGCAACATATGCGGCGAAGTATTCCAACACTTCTACTACTTAGAGGAACATCTAAAAAGTCACGGATCAAAAATAGCAATCGAAGATCTAAACAAAAcggaagaaaaaaaatatgtatgccAAGTCTGCAATAAAAGCTTCAAATtgcattattatttgaaattgcACAGTTTTACACATTCGAAAGAAAAGCCTTTTATGTGTCAGCAGTGTGGGAAAGGTTTTATTACCCGGGGGAAACTCAAACGCCATTTGGAGACCCATACCGGCTTGAAGAAATACCAATGCCATATATGCTATAAGTTCTTCACTAGGCCCAGTTATTTGAGGATCCATGTCAGGACTATACACGGTACTCAGgattataattttagaattgAAAAGGAATGTGGTATGGGGTATAATTCTCTCTCTGTCAGTGATATGAGTCAAGGTAGTCTGtga
- Protein Sequence
- MNNLAIDVDPLSSFEYPQYNPYPNNEYSYNLKAEEPNITYKYEMFPITQETGNNMHTHEVPITNLQNNEIPIENVKNVQEQPKNQEQEDIKPIIVGNKIKKERTKGRTSNYWSVKITDKDFAFYGCAVCNIQYKSLHELDQHVTIHKDRITSYDLRIKNQMLKKIKNKKVKKVKEEIVPKLEIDIKPEDGYIGNEKASDFGQNNENAQENDVMANDDGDASKSEVKKDIQGKKKEYNMEKIYKCFCCQKQFLLSYYLKLHVRSHTDEKPYTCSICGQSFITASHLGRHNKRIHLAVKHQCRICYKFFSRFELLTRHFDKKHPDDKLEGEPYDYNVILPYLKELEEQLRQKSEDDKKPKTEDLWGDKWPLEEPSAIQENQDDKHQDLDNKDFDPPLLPPENVTVERVTISEDLLETQIKLEVEEIPEAVMEPEAEGACDDAGDDSVKDESCSDDDYFPSNTWAATPKIEHPPPSPPRTTRRKKSDERTLQCDVCQKTISSISYMRVHMRTHTGERPFKCYVCGRGFITSSKMHRHVLTHSETWDDSGSVNDTKKNIKSENDTNDNGEEKSDKESRLKKSKAKFAKKRMKGPKVDRPKKYQKRLHACEFCHKRFLHMETLQVHKKSHEGEELVIKCTYCLEKFDDEAELRQHELTHDGPKPFLCTLCGKTYKKRETMMYHRKHHKAVKEFECAICQKRFNAQCKLQRHVVTHGVDKYVLRYECPVCAHMFNTKYHIQMHLVTHQKEGLIVEENRNEILAMVLQNARKIPKGPDSSANVPDIIPADERSRVCNICGEVFQHFYYLEEHLKSHGSKIAIEDLNKTEEKKYVCQVCNKSFKLHYYLKLHSFTHSKEKPFMCQQCGKGFITRGKLKRHLETHTGLKKYQCHICYKFFTRPSYLRIHVRTIHGTQDYNFRIEKECGMGYNSLSVSDMSQGSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01083588;
- 90% Identity
- -
- 80% Identity
- -