Tocu021882.1
Basic Information
- Insect
- Tethea ocularis
- Gene Symbol
- -
- Assembly
- GCA_963555595.1
- Location
- OY741985.1:3736074-3741500[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.062 4 8.6 0.5 1 23 170 193 170 193 0.92 2 24 3.9 2.5e+02 2.9 0.1 2 23 220 242 219 242 0.92 3 24 0.4 26 6.0 3.7 2 23 266 287 265 287 0.96 4 24 0.0001 0.0066 17.3 0.2 1 23 291 313 291 313 0.98 5 24 0.12 8 7.6 3.5 1 23 318 341 318 341 0.93 6 24 0.081 5.2 8.2 0.6 1 23 348 371 348 371 0.92 7 24 0.00074 0.048 14.6 5.3 1 23 378 400 378 401 0.95 8 24 0.0049 0.32 12.0 4.4 1 23 407 429 407 429 0.97 9 24 3.6e-05 0.0023 18.7 4.2 1 23 435 457 435 457 0.98 10 24 0.065 4.2 8.5 0.8 1 23 611 634 611 634 0.93 11 24 0.015 0.95 10.5 1.1 2 23 706 727 705 727 0.96 12 24 0.012 0.8 10.8 0.0 1 23 731 753 731 753 0.98 13 24 0.083 5.4 8.2 1.8 1 23 758 781 758 781 0.94 14 24 0.15 9.6 7.4 1.4 1 23 788 811 788 811 0.92 15 24 0.0021 0.14 13.2 4.5 1 23 818 840 818 841 0.96 16 24 0.0042 0.27 12.3 0.2 1 23 921 944 921 944 0.92 17 24 0.33 21 6.3 0.1 2 23 971 993 970 993 0.96 18 24 0.83 53 5.0 4.7 2 23 1016 1037 1015 1037 0.97 19 24 0.0021 0.14 13.2 0.1 1 23 1041 1063 1041 1063 0.96 20 24 0.00023 0.015 16.2 1.0 1 23 1068 1091 1068 1091 0.96 21 24 0.0013 0.081 13.9 1.2 2 23 1129 1151 1128 1151 0.96 22 24 1.1e-05 0.0007 20.4 1.6 2 23 1158 1179 1157 1179 0.97 23 24 8.7e-05 0.0056 17.5 3.7 1 23 1185 1207 1185 1207 0.99 24 24 2.8e-05 0.0018 19.1 2.1 1 23 1213 1236 1213 1236 0.98
Sequence Information
- Coding Sequence
- ATGCTTAACTTTGCAACCAAGTCAGATGAAATCCTTACTATCATTATTGCTCTTCTCCTAAAGCAGCAAATGAATGTCGAAAAACAATTTCTTGTCACTGCTAACTACCaattcaattttgatgaaaattggcagagatgTAACATGGACTTTGATATACATAGGATATGGGAACGCGGATTAACCATTAGGGATAGTGTGCGTCAGGCCGAAGGtgtcatcaaaatcaaaacggAGAAGACCCGTCAGCCtgaaaatatcaaaaaacaCAGAAAGGGGGGAAAGCTAAAAGTCATAAAACTAAGTAAATCCAGAATAGGATGGGTTAAGAAAAGGTCAAATAAATCAGAAGACGAAATTAAAAGGAGGAAGAAGACTATTAGCATACCTGCGGAGAAAAGAAAGTGGGCTACTAAATTGGGGGCGGCTGACAAGCACCACAACAATATTAGAGAAATAATCGAATGCTCTAACGCTACTCCCATCCGATGCTACGGCGGGATAGGGTACGCTTGCTGCTACTGCGATGGCCGGTACCCCGAGCCCGCAGATCTCAAAAAACACACATCTGCAACACACAATGATGTCACTGCAGCGAACTTCTTCAAAACGCGACGAGTAGACCAGTACATCATCAGATTAGATATCACTTCTCTTATGTGCAAACTATGCAACGAGAATATCGACACATTAGAAATGTTCTTGGACCATTTAAAAGATGTGCACAATAGAAATATTTATACGGACATAAAAAATCAGATCGTGCCATTTAAATTTAACTGTGGCGATGAGCTCACATGTTGCATGTGCCTGAACAAATTTAATACCTTCAAGACTTTGCTATGGCATATGAACTCGCACTATAGGAACTTTGTTTGTGACGTTTGTGACGCTGGTTTCGTCAACCAGTGCAATTTGGCTGATCACGCAAGGACGCACAAGATAGGGACATTCGTTTGCGATTATTGTCCTCGAGTATTTGATACGCACGTGAAGAAGAAATCTCACGAGCATCGCATACATGTGCGTTCGAATCTATCACACAAGTGTGGGTACTGCAGTGAAATGTTTAGAGACTACAGAGTGAAAGAAGCTCATATGATTGAAGCGCACAACGTACGTCCTCTCATACACAAGTGTCAGGCTTGCGACAAAACGTTTAAAAATCGCAGCGTCTTGTATATTCACATTAAACGACACCATTTACTGGAAAGACCCCATAAATGTGAGCATTGTGACATGGATTTCTTCTCGAATAAAGAGTTGAAGGATCATTTGGTTAAGCATACAGGATTAAGAGAATTTCATTGCGATGTCTGCCTCAAATCTTTTGGAAGAAAGAATACTTTGAAGACACATATGCGCACTCATgTTTGGTTTGGTATTTATTTGAAAGCCGGTAAGACGAAAGAtcgcttcatcaaccttaccgggtACCAATTTTTGGACAAATCGGTGAGTGCAGAGGGCTATCAACTGGCCAACATTTTGGTAACCGTGCATGAGGGCACCtccaaatgggGTGGACATCAGCCAGAAACTGTCtttaacaaaaaagaaacaCGACGAAACCGACATGTTCAAAGGGAGAAAATAAATCATGGTAAGATGAAGGTGATACAGATAAAAAAACCTAGAGTAGCCTGGGTTAAGAAGAAACTAAAGAAGGATGACAagacaaagaagaagaaaactattaaaattccAGCTGAAAAGGACACAGAAGCTAAATCCGCTAAGTGGGGGCCAGCTGACAAACATCATAGTAATATTAGAGAAATTATGGAATGTTCTAATGCGACTCCCATTCGATGCTACGGTGGGATTGGTTACACATGCTGTTTCTGCGACGCACAGTACCCTGAGCCCGCAGATCTAAAAAAACACACATCTGCAACACACAACGATGTCACTGCAGCGAACTTCTTCAAAACGCGGAGAATAGACCAGTATATTGTTAGATTAGACATAACGGCACTCATATGCAAACTGTGCAACGACAATATCGATACATTGGATCTGCTCATAAATCACTTGATTTTCACGCATAAAAGAAATATGTACACAGATATAAATAATCAGATTGTCCCCTTCAAATTCAACAGCGAATCCCTCTCCTGCTTCATTTGTACAAACGTCTTTAACAAGTTCAAGACTTTACTCTGGCATATGAACTCGCATTATAGAAATTATGTTTGCAGCGTCTGCGATGCCGGCTTTGTGAATAACGGTATTCTTTCAGTTCATGCTAGGACACATAGAACTGGGAATTTCGTCTGTGATTATTGTCCGAAACTGTTCAATACACATGTAAAGAAAAAGGCGCATGAGAGTCGAATACATATGCGTTCAAATTTGTCGCATAAGTGTGGCTATTGCAGTGAGATGTTTAGAGATTATAGGGTTAAAGAAGCTCACATGACGCAAGTACATAACGTGCGTGCCGTCGTTTATAAGTGTCAGGCTTGCGACAAAACGTTTAAGAATCGAACAGTCTTGTATATTCACACGAAAAGACACCACTTGCTTCAACGACCGCATAAATGTCCACGTCAGCAAGTTGTCATCAAAAAGGAAATTGAAGACACCGAGCCTCATAAACCTAAGGTGACATTGAACAAGAAGAAAATAATTACCATAGAGTCTCTAACGAAGCCTACGGTCATAAAATGTCGCAAAGTAGACAAACACCTAGTTAATTTAAAGGAATTATTGAGGTGTACCAACGCAACACTTATACAGCGTCATAGGGGTATAGGGTATACATGTAGCTACTGTGAGGAACAATTCCCTGAACCAGGAATGTTGAAGACACATACAATAGACACCCATAAAGATCCCACGCAAGCTAGCTTCATGAAAAACGTCTACATGTCGGATTACGTCGCAAAATTAGATATAACGTCATTGCAATGCAAGTTGTGCAACAAAGACATAGATTCCTTAGAAAACGCGATGGAGCATCTAAAAATGGAACATGGCAAAAAAATTGATACAGATATAGATAATCACATATTACCTTTCAAGCTTGACAGCGAACCTCTGCAATGTTACATGTGTTACAACACATTCAATCATTTCAAAGGACTCTTAGAACATATGCACTCGCATTACAGGAATTATGTGTGCGATATATGCGACAGTGGCTTCGTGAACGCATCAAAACTAGCTCAGCACAAAGGCTCTCACGAAAAGGGACAGTTTGCCTGCGAACACTGCCCTAAACAATTCGACAGCCCTACTAAAATGAAAGCTCACGTAAGAGTAAAGCACAAACTGTCAAATTTAGTACTCAAGTGTGCATATTGCAATGAAAGATTCTACTGTACGAGATACAAGCTTAAACACATGGCTTTAGTTCACGGTGTGCCTCTGCCGACGGTGCAATGCAAAGCGTGCGAAAAGACGTTTGAAAACCTCAAAGATTTGAAAATGCACACTAAGAAAGATCATTTAATGGAGAGGAGTCAGAAGTGCACATTATGCGATAAGTCGTTCTACGATTCTTACACTTTGAAGACCCATATGGTTTCGCACACTGGTTTAAAGCCGTTTAAGTGCGATGTGTGTTTGAAGTGTTATGGGAGGAAGAAAACTTTAAGGGAGCATATGCGGATACATGAGAATGATAGGCGCTTCAAGTGCGAAGAATGCGGGCAGGCGTTCGTGCAGAAATGCAGCTGGAAAGGGCACATGCGCACAAAACACGGCTTAAATGTACAAAAATGA
- Protein Sequence
- MLNFATKSDEILTIIIALLLKQQMNVEKQFLVTANYQFNFDENWQRCNMDFDIHRIWERGLTIRDSVRQAEGVIKIKTEKTRQPENIKKHRKGGKLKVIKLSKSRIGWVKKRSNKSEDEIKRRKKTISIPAEKRKWATKLGAADKHHNNIREIIECSNATPIRCYGGIGYACCYCDGRYPEPADLKKHTSATHNDVTAANFFKTRRVDQYIIRLDITSLMCKLCNENIDTLEMFLDHLKDVHNRNIYTDIKNQIVPFKFNCGDELTCCMCLNKFNTFKTLLWHMNSHYRNFVCDVCDAGFVNQCNLADHARTHKIGTFVCDYCPRVFDTHVKKKSHEHRIHVRSNLSHKCGYCSEMFRDYRVKEAHMIEAHNVRPLIHKCQACDKTFKNRSVLYIHIKRHHLLERPHKCEHCDMDFFSNKELKDHLVKHTGLREFHCDVCLKSFGRKNTLKTHMRTHVWFGIYLKAGKTKDRFINLTGYQFLDKSVSAEGYQLANILVTVHEGTSKWGGHQPETVFNKKETRRNRHVQREKINHGKMKVIQIKKPRVAWVKKKLKKDDKTKKKKTIKIPAEKDTEAKSAKWGPADKHHSNIREIMECSNATPIRCYGGIGYTCCFCDAQYPEPADLKKHTSATHNDVTAANFFKTRRIDQYIVRLDITALICKLCNDNIDTLDLLINHLIFTHKRNMYTDINNQIVPFKFNSESLSCFICTNVFNKFKTLLWHMNSHYRNYVCSVCDAGFVNNGILSVHARTHRTGNFVCDYCPKLFNTHVKKKAHESRIHMRSNLSHKCGYCSEMFRDYRVKEAHMTQVHNVRAVVYKCQACDKTFKNRTVLYIHTKRHHLLQRPHKCPRQQVVIKKEIEDTEPHKPKVTLNKKKIITIESLTKPTVIKCRKVDKHLVNLKELLRCTNATLIQRHRGIGYTCSYCEEQFPEPGMLKTHTIDTHKDPTQASFMKNVYMSDYVAKLDITSLQCKLCNKDIDSLENAMEHLKMEHGKKIDTDIDNHILPFKLDSEPLQCYMCYNTFNHFKGLLEHMHSHYRNYVCDICDSGFVNASKLAQHKGSHEKGQFACEHCPKQFDSPTKMKAHVRVKHKLSNLVLKCAYCNERFYCTRYKLKHMALVHGVPLPTVQCKACEKTFENLKDLKMHTKKDHLMERSQKCTLCDKSFYDSYTLKTHMVSHTGLKPFKCDVCLKCYGRKKTLREHMRIHENDRRFKCEECGQAFVQKCSWKGHMRTKHGLNVQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -