Tocu021418.2
Basic Information
- Insect
- Tethea ocularis
- Gene Symbol
- zfh1
- Assembly
- GCA_963555595.1
- Location
- OY741985.1:552281-558829[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.01 0.67 11.0 0.1 2 21 113 132 112 133 0.94 2 26 3.6 2.4e+02 3.0 0.1 3 23 139 158 138 158 0.94 3 26 0.2 13 6.9 10.6 1 23 163 185 163 185 0.97 4 26 0.0014 0.092 13.7 2.2 1 23 190 212 190 212 0.97 5 26 0.32 20 6.3 6.5 2 21 216 235 215 236 0.92 6 26 0.00036 0.023 15.6 1.5 1 23 248 270 248 271 0.95 7 26 6.6e-07 4.2e-05 24.2 2.3 1 23 277 299 277 299 0.99 8 26 0.022 1.4 10.0 1.0 5 23 309 327 308 327 0.97 9 26 0.003 0.2 12.7 1.7 1 23 356 378 356 378 0.97 10 26 5.8e-06 0.00037 21.2 3.4 2 21 500 519 499 520 0.93 11 26 2.7 1.7e+02 3.4 0.2 3 23 526 546 525 546 0.88 12 26 0.00081 0.052 14.5 0.3 1 23 551 574 551 574 0.97 13 26 0.00023 0.015 16.2 0.0 1 23 579 601 579 601 0.93 14 26 0.00016 0.01 16.7 0.3 1 23 637 660 637 660 0.93 15 26 5.1e-06 0.00033 21.4 1.8 1 23 666 688 666 688 0.98 16 26 2.7 1.7e+02 3.4 1.0 1 23 722 745 722 745 0.90 17 26 0.00076 0.049 14.6 0.8 2 21 871 890 870 891 0.93 18 26 4.8 3.1e+02 2.6 0.0 3 23 898 919 896 919 0.94 19 26 0.0099 0.64 11.1 0.6 3 23 926 947 925 947 0.97 20 26 3.3e-05 0.0021 18.9 0.2 2 23 953 974 952 974 0.96 21 26 1.7 1.1e+02 4.1 0.5 3 20 979 996 978 998 0.91 22 26 4.1e-06 0.00027 21.7 0.9 1 23 1024 1047 1024 1047 0.95 23 26 0.00053 0.034 15.1 0.5 1 23 1053 1075 1053 1075 0.95 24 26 0.12 7.6 7.7 0.1 1 23 1081 1103 1081 1103 0.97 25 26 0.0017 0.11 13.5 0.5 1 23 1109 1132 1109 1132 0.94 26 26 0.00033 0.021 15.7 0.2 3 23 1139 1160 1137 1160 0.94
Sequence Information
- Coding Sequence
- ATGGAGAGTTCGACATCGCTGCCTAACAAGCTATGCCTCCACTGCAGTACGAAAACGTTAAATTTCATACCGTTCTTACTACTGTGCAAGGATTCCGACAGGAAATGGAAGAATATAGTAGAATTCTTGGATTTACCGTCAACAGTCAAACACAATGTCCACGTGCTCATATCAAACGATTGTAAGCAGAGAGATATCCTTAATTGTACAAAAAGGTTAGCGAAAGACAAGAAAGAAGCATTGAAGCAATTAAAACAACGTTTGATGAGGAAAAAGCATGGTAACTTAAGGCACGAGAGAGAGAGGCAATTGAAATTAGCAAATGTGGTGACAATGTCGTGTCCAGAATGCGCCAGACCATTCTATacagtttacaaattaaataaacactTGAAAGGCTTAAGGAAAAAGATGTGTCCGGTCTGCAATGTTATTGTGGATTTTGAAGAGTACAATTCTCATGCGCGCACACATGGTGTGATCGTTTACTGTTGCGATATTTGCCATGAATGTTTCAATCGGAAGAAATATTTCTTGATGCACAAATCAAAACATTCAAGGGGTAAACACGTGTGTCCAGAATGCAAACTCTCATTTTCGAACTTGAACAAGTTTCTTTCGCATCTTTCAAGGCATAAGCGTTGTGTTTGTTCTACATGTAATAGGAAATTTTCGAATAAAAATTGCTTTCTCAACCATAAGAAAGTGTGCGCCGAGAGTAAAGACCTTAGCGTCACTAAGTTCATTTGTGATTATTGTTCTAAAGTGTATAATTCTAAAACAGCTGtgaaactacatataaaaattcaTCACCTCGATGCGATTAAATATCAATGTGACAAGTGTGGAAAaacgtttataaataaatatcatttggAGGAGCATGGCAACACTCACGAGAAAGTCTTAGATAGATTCGTCTGCGAGTGTGGATTGAATTATAGTACACGTAGGGGTTACCAGAGACATATAAAGAAACATTTGAAATCAAATTATGTGAAAACCAAATCGCGCGTGGCGAAAGCGAGTCCAGTATTTAGATGTGTGTCGAAAGCAAGTACTTTATTTAGTTGTGGTCAGTGCAACGATAGTTTTAGTGATGTGAAAGATTTTAAAAGACATATgaattttcatagtaattttgatttgaatatggAACCTGCTATGGAGATTGAAATCGTGGAGGAGCCGTCCTTGCCTCAGGGGTTATGCAGATCATGCTCTGAAGACATCGTCGCAGCAGTTCACATCAGACAACTGTGCAAACTCTCCGCACAACATTGGGCCGATGCGACCACATTCCTGGCCCAAATCTATGATCCAACTGAAGAAGACAAGTGTTACTATGTCTTCTACAATGGAGAAGAAAACACTATAGTGAAAGATCAAATCAATCGAGTACCAAGTGTACAAGAAGCTCTCGAGagattaaatagaaaatttgtgttTGATACTCCAAAGCCGACGAGAATAAGACGGTCAAATGACGTGTCTTGCCAGTGCCCGGATTGTGGAAAATCTTTTACCAAtccatgttatttaaataaacatttgaaGAGTACTCCTAAAAGAGCTTGCAGTGAATGTGGCCTTGTAGTTCCGAAGAAGAGCTTGAGCAAACATTTTTCGAAAGCCCACGATATAGTCGTTTATACCTGCAGTCGTTGCAACGAGGTGTTCGATGATGAAGAATATTTGATGCAACATTGGCTCAAATCTCACGGGGCTAAAAAGTTCGCCTGTGACGACTGCGGTCGGAGTTTCGTGAACGAACGAGCCTTGAGCGCTCATTGGTACGCTCACAGCCTCTTCCACTGCAAATCTTGCAGCCTTAGCTTTGAAAATCGCAAATGTTGTAAACACCACGAGAAACAGTGCAATTCAGAGCAGCAACCAATCTCTTCTGCGTACGAATGTGATTACTGCGGTGTGTCGTACACAAAAAAGCCCTCTTTAAAAATTCACATAGTGCAAAAACACATGAATGTACTCCCGTTCGTGTGCCCAACATGCGGGAAACGTACATCGACCAAAGGTCACCTTAGGTCACATGAAATGACGCATAAGAAAGAGAGGAAGATATACGAATGTTACTGCGGAGCGAAACTATTATCTGAGCTAGGTTATCAGTTGCACCAGAGAATACACAGTGGAGAGAAGCCGTTCACGTGCGACGAGTGCGGAGATAGATTCCTGTCTTCTTCGCGGAGATTGGATCATATAAAGAGAAAACATAGAGGCACTAATGGCTTGCCGTATGCTTGTGAGAAGTGTGCGGCGCGGTTTGTAAAGGATGAAGCTCTTTGCCCTCCAGGAGTATGCGTTGGCTGCGCCAGCACCGCCCTCGCTGCCCAAGAGTTCAGTATCTTTGTCAAGAACGCCCAAAAAATGTGGCATAAAGCCGTTAGCAACTTATCAGTGCTCTCCGATTCCTCGGCACCCAACGTTAAATCCCTATACGCCTTCGTCAGAAAATCTGATCTGTCAATCCAAACTATAAACGACTTCGCAGGCGGCGACACGAAAACAGTTTTAAACCGTTTAAAAAACAGATTTAGTAAAAAACAGGTGCATAGGAAACCTAGGAACGCGCGCACAGGACCTACATGCTCGTGCCCGGATTGTGGGAAGTCGTTTCTGAGTccatattatttgaatatgcATTTAAAGAACAGTGGGCAGAAAGACGCTTGCTTAATTTGTGGCGCGGTAGTTTTCCGAGGTCGTGCAATGCAGGAACATCTATCAACGGTGCATAAAGATAAAGTGTCGCTATGTAAACGATGCCCTATGCTGTTTAGCAGTGAGTCTAAACTAGCGAAACACGTAAAAAAAGCCCATAGCCCCGGGATCTTAACCTGCACTGACTGCGGTAGGACTTTCCCTCGAAACGCATCGTTTGAGCTACACGCGCAAATGCATGCAGTACGCATATGCCGCGCTTGTGGTGTACAGTTCACCAATCGCGGATGTTATAGGGAACACCGTGCCCAATGCGAGCCAGACGCGAAACCTGACGCGCAAACTGTACCGCGTAACAGACGGTCGAATATCCGCGACCCAGCGCAGTATACCTGCGATCATTGCGGGAAAACCTACAATTCCAGGCCTCAATTAAAGAATCATATCATTTGGATTCATATGGACGTGAGGCCTCATCAGTGCCAATGGTGCGGAAAACGTTTTTACACTCCAGCTAGGTTAGCAGAACATACAGTAGTTCATACTCGTGTCAGAAACTTCGAATGTGACATTTGTGGCGCCAAATTGGTTTCCAAAATGGCCGCCGTGTATCATAGGAGGCGTCATACAGGCGAGAAACCGTATAAATGTGAGGATTGCGGAGAGACATTTATTTCAGCTTCAAGGAGGTCAGAACATGCAAAGCGAAGGCATAACGTGTTGAGGATTAATTGTGTTCAATGTCCAGCGACTTTTGTGAGACGATATGACCTTAAAAAGCATATAGATAAGGTTCATAATAAAGAAGAGAACGAAAATATTAAACAGGACAGATTTGCGGATATCTGcaaaattgaaaaatga
- Protein Sequence
- MESSTSLPNKLCLHCSTKTLNFIPFLLLCKDSDRKWKNIVEFLDLPSTVKHNVHVLISNDCKQRDILNCTKRLAKDKKEALKQLKQRLMRKKHGNLRHERERQLKLANVVTMSCPECARPFYTVYKLNKHLKGLRKKMCPVCNVIVDFEEYNSHARTHGVIVYCCDICHECFNRKKYFLMHKSKHSRGKHVCPECKLSFSNLNKFLSHLSRHKRCVCSTCNRKFSNKNCFLNHKKVCAESKDLSVTKFICDYCSKVYNSKTAVKLHIKIHHLDAIKYQCDKCGKTFINKYHLEEHGNTHEKVLDRFVCECGLNYSTRRGYQRHIKKHLKSNYVKTKSRVAKASPVFRCVSKASTLFSCGQCNDSFSDVKDFKRHMNFHSNFDLNMEPAMEIEIVEEPSLPQGLCRSCSEDIVAAVHIRQLCKLSAQHWADATTFLAQIYDPTEEDKCYYVFYNGEENTIVKDQINRVPSVQEALERLNRKFVFDTPKPTRIRRSNDVSCQCPDCGKSFTNPCYLNKHLKSTPKRACSECGLVVPKKSLSKHFSKAHDIVVYTCSRCNEVFDDEEYLMQHWLKSHGAKKFACDDCGRSFVNERALSAHWYAHSLFHCKSCSLSFENRKCCKHHEKQCNSEQQPISSAYECDYCGVSYTKKPSLKIHIVQKHMNVLPFVCPTCGKRTSTKGHLRSHEMTHKKERKIYECYCGAKLLSELGYQLHQRIHSGEKPFTCDECGDRFLSSSRRLDHIKRKHRGTNGLPYACEKCAARFVKDEALCPPGVCVGCASTALAAQEFSIFVKNAQKMWHKAVSNLSVLSDSSAPNVKSLYAFVRKSDLSIQTINDFAGGDTKTVLNRLKNRFSKKQVHRKPRNARTGPTCSCPDCGKSFLSPYYLNMHLKNSGQKDACLICGAVVFRGRAMQEHLSTVHKDKVSLCKRCPMLFSSESKLAKHVKKAHSPGILTCTDCGRTFPRNASFELHAQMHAVRICRACGVQFTNRGCYREHRAQCEPDAKPDAQTVPRNRRSNIRDPAQYTCDHCGKTYNSRPQLKNHIIWIHMDVRPHQCQWCGKRFYTPARLAEHTVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGEKPYKCEDCGETFISASRRSEHAKRRHNVLRINCVQCPATFVRRYDLKKHIDKVHNKEENENIKQDRFADICKIEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -