Tocu016002.1
Basic Information
- Insect
- Tethea ocularis
- Gene Symbol
- -
- Assembly
- GCA_963555595.1
- Location
- OY741975.1:1896078-1899247[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8 1.1e+03 -0.0 0.0 31 40 44 53 28 56 0.78 2 2 4.6e-07 0.00027 21.1 0.0 2 37 201 236 200 243 0.92
Sequence Information
- Coding Sequence
- ATGGATCTGCCAGGACCATCTAATTCAAATAATGGTCCTCGATTCGATTTGGTAGCATCGCAAAGAGGAAAAAGTCTTCTTCTTCGTGCTGGatataaatatgatataaaaCGAAAAAACAAGGATGGATCAACAGTTTGGCGCTGTGTGCAAAGAAGTATCTGCAAGGCAATTTTAATTACAACATGTGTTAATCTTATTAAAAGAGAAGACAACCATGCATGTGAACCAGATACTGTGTCCAACGAATACTCTTTACATTTGGATAATAGtgtgaaaaaaattatatccgAGGTTACTGTGCCTGTTTCGAGTATCTATCGTGAAACCGTCGGCAAGATGAAAGACACCGGAATggacttaataaaaaatataccaaaattcAACAATATCAAAAACAAACTTTATCGAAAAAGGAACGAATCGTTAGGTGTCTCCATAACTGGAAATTACTACGCTTCAATCCTAGAACAATTGAAGGAAGCCATAAAGGAGAAAAGGCACGACAACGCGCCAGTTCACAAGTGCCGTGTTGCGATGGCTGCCCTGCAGAAGATGGTTAACAACTGTAAAAGAGAGTCGGACCTACAATCTTGGCGTGAGGAGGATATGAAAAATGCCATTGAAAAAGTAGCTACGCGCAAAATGGAACTTAACAAAGCGGCCGCGACATTTAATGGTCCAAAGACTACATTAATACGAAGACTTACCAAATATCAAAGCACCAAAGACTTAACTGTAGAGGATAGTAATAATTCAGATGATGAACCATCATGTTCAACCTAA
- Protein Sequence
- MDLPGPSNSNNGPRFDLVASQRGKSLLLRAGYKYDIKRKNKDGSTVWRCVQRSICKAILITTCVNLIKREDNHACEPDTVSNEYSLHLDNSVKKIISEVTVPVSSIYRETVGKMKDTGMDLIKNIPKFNNIKNKLYRKRNESLGVSITGNYYASILEQLKEAIKEKRHDNAPVHKCRVAMAALQKMVNNCKRESDLQSWREEDMKNAIEKVATRKMELNKAAATFNGPKTTLIRRLTKYQSTKDLTVEDSNNSDDEPSCST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -