Tocu007640.1
Basic Information
- Insect
- Tethea ocularis
- Gene Symbol
- -
- Assembly
- GCA_963555595.1
- Location
- OY741963.1:12113452-12120179[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.4e-11 3.8e-08 33.4 0.0 4 39 176 212 173 216 0.89 2 4 5.8e-11 3.4e-08 33.5 0.3 2 39 228 265 227 268 0.92 3 4 3.9e-16 2.3e-13 50.1 0.1 2 45 283 327 282 327 0.96 4 4 1.6e-18 9.3e-16 57.8 0.1 1 44 334 378 334 379 0.96
Sequence Information
- Coding Sequence
- ATGCTCGGCCACGGATTATCTCGAGTGAAATGCGAACCTCAGTCAGACGAAGAAGACAGCAATTCACAATTTACTCACGGATATTTATCTaatcagctaCCCGCATCGGTTTATCCAGTGAATATAAAATCAGAGTGCCGGATTGAAGAAAATGTGCCATCCCATCTCTTGCAGCATTTACAGGGATCAGGTCTGGAGGAGCTGGCGCCGGCGGGTCCGGCTGCCACCCCGGTGTGCGTCAAGCAGGAACCCGCGGATACTCCCGCGTTGACCCTCGAGACCTTGCACTCAGCTCCTCATAATGCTGCGGGCTCCATTCTGATCGATAGACACATGTCGATGTCAGCATTTGAGCTGAAAAACGAAGTGCCTGACTCCTCGGAGTTTATGCCATTATTGGCTGTCAAAGATGAACCTGTATCGGAAggagAGCAACAGCAACTAAGTGGTGACGATGCGAGCGACTCGAGCGGTGCTCAGCATGAGACCTCCACACGAGGCAGCCCCAAGAGCTGGACGCAGCAGGATATGGATAACGCGCTTGAAGCACTGAGGAAACACAACATGAGTCTAACTAAGGCATCAGCTACATACGGTATTCCCTCAACAACCCTCTGGCAGCGCGCGCACCGATTAGGAATCGATACACCGAAGAAGGAAGGTGCTTCAAAATCTTGGAGTGAAGCCGATTTGCGTGGAGCCCTGCACGCTCTGAGGGCAGGTGCTATATCTGCCAATAAGGCGAGCAAAGCTTATGGCATCCCGAGCAGTACACTGTACAAGATAGCGCGTCGCGAGGGCATCCGCCTGGCGGCGCCGTTCAACGCGGCTCCCACCGCGTGGCGCCGCGCCGACCTGCAGCGCGCGCTCGCCTCCATCCGCTGCGGAGCCACCTCCGTGCAGCGGGCTGCCTCACAGTACGGGATACCCACAGgAACACTATATGGACGATGTAAGCGAGAAGGCATAGAGCTATCTCGGTCCAATCCAACACCGTGGTCGGAAGATGCCATGGGGGAAGCACTTGAAGCAGTTAGGGTAGGTCAAATGTCAATAAACCAGGCAGCAATACATTACAACCTGCCATACTCATCACTCTATGGACGATTCAAGAGATGCAAGTACCAAACACAGAGTCTCCAACCAATTCCACAAGAAATTCAAAAGGACAATGAAGTggagaatcaaaatcaaaacatgTACTATCAGCAGCAGATGCCCGCGCATCCAGTTCATCACCTCGATGACCAATCACACGTTCCGTACGTACAACACGTTCATGAATATATGCAGGATGCGTCAGCCCATAACATGTTACAAGACCAGTATGGACAAGCAATGTATTACAATCATAATTTTAGCAGTATAGCCACCAGCTGA
- Protein Sequence
- MLGHGLSRVKCEPQSDEEDSNSQFTHGYLSNQLPASVYPVNIKSECRIEENVPSHLLQHLQGSGLEELAPAGPAATPVCVKQEPADTPALTLETLHSAPHNAAGSILIDRHMSMSAFELKNEVPDSSEFMPLLAVKDEPVSEGEQQQLSGDDASDSSGAQHETSTRGSPKSWTQQDMDNALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLQRALASIRCGATSVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQTQSLQPIPQEIQKDNEVENQNQNMYYQQQMPAHPVHHLDDQSHVPYVQHVHEYMQDASAHNMLQDQYGQAMYYNHNFSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00761549;
- 90% Identity
- iTF_00761549;
- 80% Identity
- -