Tfer001389.1
Basic Information
- Insect
- Tetanocera ferruginea
- Gene Symbol
- -
- Assembly
- GCA_958299015.1
- Location
- OY282640.1:12291140-12294543[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0013 0.22 13.4 1.2 2 23 204 226 203 226 0.93 2 18 1 1.7e+02 4.3 3.5 2 19 269 286 269 288 0.94 3 18 9.1 1.5e+03 1.3 1.9 3 23 302 322 301 322 0.89 4 18 0.2 33 6.6 1.0 2 23 330 352 329 352 0.91 5 18 0.0012 0.19 13.6 1.1 3 23 360 380 358 380 0.96 6 18 1.8e-06 0.00029 22.5 1.6 1 23 386 408 386 408 0.99 7 18 9.4e-07 0.00016 23.3 1.2 2 23 412 433 411 433 0.97 8 18 9.2e-05 0.015 17.1 0.3 1 23 482 506 482 506 0.91 9 18 0.99 1.6e+02 4.4 1.8 1 23 511 533 511 533 0.96 10 18 0.28 47 6.1 0.1 1 23 549 574 549 574 0.94 11 18 0.028 4.7 9.2 0.1 2 19 580 597 579 600 0.91 12 18 0.0094 1.6 10.7 0.5 1 23 607 630 607 630 0.95 13 18 0.0012 0.19 13.6 0.8 1 23 635 658 635 658 0.91 14 18 0.0015 0.25 13.2 1.6 2 23 662 684 661 684 0.96 15 18 0.00045 0.076 14.9 1.0 1 23 690 713 690 713 0.93 16 18 0.0017 0.28 13.1 0.5 1 23 718 740 718 740 0.98 17 18 0.00024 0.04 15.7 2.6 1 23 746 768 746 768 0.98 18 18 0.012 2.1 10.4 1.8 4 23 782 802 774 802 0.85
Sequence Information
- Coding Sequence
- ATGCCGCGGAAATTATCaccaaaaaaatgcattcactGTTGTAAAAGGGAAGACACAGAATTTCATGAGATCTTTGATGAAGTGGGAATCGAGTTACGTCTGGATGAATTGCTGGAGCAACACTTTCAGTTGAAGGTCACGCCCAGTCAGGGCGAGCAGCCAGTCTTGTGCGATGAATGCGTGAATCAGCTGATTGAACTATACGATGTAGCGGAAAAACAGAAGGAACAAGAGATCATTTCATCAAATGTAGATGATGTCAAAGCAGAAGTATGGTTAGAGGAAAAAGCAGATGATGCAAAAATATCATCTGAAGTGATTGAAACTGAGAATGATGGAGAGCCAGATACTGTCGATGATTGTGCCACAGAAACTTTGGTTGACACATTTGATGTGGAGAAGGATGAGATGTTGGAATGGGATGACGCAACAACAGTTATTGATTATGATGAATGTGATGAGCTGAAGGAGGAAACTGAATTAACCGAACAACAGATTTATTTTGGCGAAAATAAAGATGATGAGGAATTTGATGACGCAGCAATGCAGCAGTACGCGGATGCAATAATAAACAGCAACTTTGAAGATCTGCAACTGGAGCGCGAAAGTAAATGCAATATTTGTTTCGAAACATTTACGCAACACCAGGATTTACTGCTGCACATTGAAGAGCAGCATAATCATGAAAACGGTTTCTATCCTTGCGTCCTAGACAACTGTCAGCAGTTACTTGAGAGTGAACGGCTTTTGGCTAGACATATTGTTCTAAAGCATTATGATTTACGCGGGATTTCCATTTTCGGCTCTTGCTCCAATTGCGGAATGCCTTAttctaattttttacatttcaataagCACTCATGTTGCCGAACTTTGAAATGTAAGGGTAGGACCCCGAATTACTGCGGCGATTGTAAAACAGATTTCCCCACATTTAGGAgATACCGTTTTCATATGCAATTCCATATGAAAAATCCACGACCAAAAGTATGTCTTCTATGTGATCGGTTCTTTAAGGATGGCGAGGAATTTTTTGAACATGTACATTACGACCATGAGTCACCAAATGAAATGATATGTACAAAATGCGATCgaatgtataataataaaaaactcttCGACAGTCACATGGCATCACACaatttagctttaaaattccaATGCACTTTATGCACCAAAGCCTATTCGCGTAAACAATGGCTTAAAATTCATATGCAAACCCATGATGAGATTAAATGTGAGATATGCAATAAGATCTTTTCAACCCAAGACTATTTTCGCAATCACATGAAGTTACATCAAGCAGAGACCGACGTTCTTATTAGTTTTTGTACTGCATGTGGGCAAATTGGACTTGAAGTAGAAGACTTACAGGCACACATAGAAGATGCGAACTCAAAATGTTATAAGGCTGAAATTGATCAGTGCTTTGTGGATGAGGTTTATTATTGTGAGTACTGCGAAACTGTTTTCAAAGGCAAAGAAGAGTTGAAACAACATCGTGCCACTGGCGTGCACCAGGATAAAATTTATCGCTGTCATGCTTGTTCGGCAACTTTCGATGAGCTTCGCAAGGTGCGAGCACATTTcaaattgcataaatatttcattgaCTGGCGAAAATCATTGCCATTGCTTAGAATATACATGTGCGATGTTGGTGACTGTGAACAATCATATGCCATGTGGCTCTCGTTGCTTAGTCATAAAACAATGAAACACAAAGAGCTGAGATTAATATGTTCTGGTTGCAATACAAAATTTGCCAACAAAAATGAATTGGATATTCACTcggcaaaatgtcaaaaagatGGAATGTTTGTCTGTTCATTTTGCGGTAAGCAGTATCCATCGAAGATGTCTCGTTCCGTGCATATAGCAAGGAGTCATAATAATAaaaactttAGCTGCTCATCATGCAAAGCATCCTTTAAAGACGAAGAGAGTCTTAAAAAACACGTTGAGTTCGTACACGTTCCCATGGAATGCAAAATTTGTCGAAAAaagatcaaaaataaaagaaatcttATGCTGCACGAACGCGTTaagcatgaaaatgaaaaacgtcATTTTTGTGATACCTGTAAAAAAGGTTTTTACAACAAAAGTGATATGGAGGCACACGCAAGAGCAGCGCATTCCGCAATCAGCTATGTCTGCGAAAAATGTCCATTTACGACAAACTATAAGAACTCCCTCGATGTTCACATGGCAAGGCATAATAACGAACTGCAGTTTAAATGTTCCATTTGTAATagaaaattttcacgcaaaagAGTCATGGAGCTGCATGTTAAACGACATCAGGTGGACAAAGAatttgtttgtgcGAATTATGGTAATCATGGTTGCACAGCTTCTTTCATAACAAGACATCTGCTTAACAAACATATCAAAGAGAAGCATTCGTCTGAGTTTGACTGTGATAAGGGGCCAGCGAAAAAACGCAGTCgtaaacaaaaatcaaacaatttggAACCAACTGAAAATACATGCGATCCAGATGATCCTGAATATAAAACAACTACTGAAGAAACTGATGAATATCTTACATATATTTGCTATGACAATCAAGAAGAAGCTATAGATTTTGTTATTGAAGATACTGCCAGCCAACAGTTTGAAATATCGCAGGATTTAGTGACCGAATGTGCAGAAGATGGTGATTTCATGATGTGA
- Protein Sequence
- MPRKLSPKKCIHCCKREDTEFHEIFDEVGIELRLDELLEQHFQLKVTPSQGEQPVLCDECVNQLIELYDVAEKQKEQEIISSNVDDVKAEVWLEEKADDAKISSEVIETENDGEPDTVDDCATETLVDTFDVEKDEMLEWDDATTVIDYDECDELKEETELTEQQIYFGENKDDEEFDDAAMQQYADAIINSNFEDLQLERESKCNICFETFTQHQDLLLHIEEQHNHENGFYPCVLDNCQQLLESERLLARHIVLKHYDLRGISIFGSCSNCGMPYSNFLHFNKHSCCRTLKCKGRTPNYCGDCKTDFPTFRRYRFHMQFHMKNPRPKVCLLCDRFFKDGEEFFEHVHYDHESPNEMICTKCDRMYNNKKLFDSHMASHNLALKFQCTLCTKAYSRKQWLKIHMQTHDEIKCEICNKIFSTQDYFRNHMKLHQAETDVLISFCTACGQIGLEVEDLQAHIEDANSKCYKAEIDQCFVDEVYYCEYCETVFKGKEELKQHRATGVHQDKIYRCHACSATFDELRKVRAHFKLHKYFIDWRKSLPLLRIYMCDVGDCEQSYAMWLSLLSHKTMKHKELRLICSGCNTKFANKNELDIHSAKCQKDGMFVCSFCGKQYPSKMSRSVHIARSHNNKNFSCSSCKASFKDEESLKKHVEFVHVPMECKICRKKIKNKRNLMLHERVKHENEKRHFCDTCKKGFYNKSDMEAHARAAHSAISYVCEKCPFTTNYKNSLDVHMARHNNELQFKCSICNRKFSRKRVMELHVKRHQVDKEFVCANYGNHGCTASFITRHLLNKHIKEKHSSEFDCDKGPAKKRSRKQKSNNLEPTENTCDPDDPEYKTTTEETDEYLTYICYDNQEEAIDFVIEDTASQQFEISQDLVTECAEDGDFMM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -