Basic Information

Insect: Tetanocera ferruginea
Gene Symbol: -
Assembly: GCA_958299015.1
Location: OY282643.1:112854948-112857330[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.1e-07 1.9e-05 26.2 0.1 2 23 231 252 230 252 0.96

2 12 0.0025 0.42 12.5 4.9 1 23 259 281 259 281 0.92

3 12 5.3e-06 0.00089 21.0 0.9 1 23 301 323 301 323 0.99

4 12 3.5e-05 0.0058 18.4 1.0 1 23 337 359 337 359 0.97

5 12 7.2e-05 0.012 17.4 2.3 1 23 365 387 365 387 0.99

6 12 3.7e-05 0.0062 18.3 3.7 1 23 393 415 393 415 0.99

7 12 9.5e-07 0.00016 23.3 0.8 1 23 421 443 421 443 0.96

8 12 0.00035 0.058 15.2 0.2 1 23 449 471 449 471 0.98

9 12 4.3e-05 0.0072 18.1 0.6 1 23 477 499 477 499 0.96

10 12 0.0037 0.62 12.0 7.4 1 23 505 527 505 527 0.98

11 12 4.8e-07 8e-05 24.2 1.0 1 23 533 555 533 555 0.99

12 12 0.00024 0.039 15.8 0.3 1 23 561 583 561 583 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.1e-07	1.9e-05	26.2	0.1	2	23	231	252	230	252	0.96
2	12	0.0025	0.42	12.5	4.9	1	23	259	281	259	281	0.92
3	12	5.3e-06	0.00089	21.0	0.9	1	23	301	323	301	323	0.99
4	12	3.5e-05	0.0058	18.4	1.0	1	23	337	359	337	359	0.97
5	12	7.2e-05	0.012	17.4	2.3	1	23	365	387	365	387	0.99
6	12	3.7e-05	0.0062	18.3	3.7	1	23	393	415	393	415	0.99
7	12	9.5e-07	0.00016	23.3	0.8	1	23	421	443	421	443	0.96
8	12	0.00035	0.058	15.2	0.2	1	23	449	471	449	471	0.98
9	12	4.3e-05	0.0072	18.1	0.6	1	23	477	499	477	499	0.96
10	12	0.0037	0.62	12.0	7.4	1	23	505	527	505	527	0.98
11	12	4.8e-07	8e-05	24.2	1.0	1	23	533	555	533	555	0.99
12	12	0.00024	0.039	15.8	0.3	1	23	561	583	561	583	0.95

Sequence Information

Coding Sequence: ATGGAAGAAGAATCCTTTCCAGAAAAACTCTTTAGCAGAACTTGCCGCACTTGCATGTGTAAAGTAGCGTCGGAGGACAACAAAGTGCTGCAGTCCATTTTCGTAGCACCAAATGAAGACGAAACAGTGCGTATTGTGGATCTTCTTATCAGCTCTACACCGCAGCTTACATTTGATGCCACTGATCAATTGCCGAAAGAGATCTGTGCGCACTGCTTAAGCCGGGTGCTGAGTGTGCACCAGTTTCAGCAAATGTGTCTACGTTCAGATGCACATATGCGCAGCCTTCTAGATTATAATTCGGTAGAAGATAAATTCACCGAAGCCCCCGAAATACTGGAGCCGCTAACAGAGGATCCTTTGCAAAGCGCAATAGCCGATACAACTCCGCTGCTGGAATTCCACGGAGAGCTTAAAACCTGTCTTAAATTGGAGCTGCAAGAGGAAGATGATGAAGAGCAAAATTGTGTAATCAACGTAGTCATCGAAGAAGATGCTAGCAAAACATTAGAAGTTgcagaaatagaaatagaagaaaataaaattgcagCTGAAATAACAGTGAATAACATAGGTGCAGCCAGTGATTGTGGCAGCACAGACTATAAATCTGATCAGGTTACTGATTCAGATTGGGAGGAAGAAAATGGAAAAACacCAAACCCCAAAAACCGACGCACAGCATCGCTGCCTTGCCCCGATTGTGGTAAGATATTCGATCGAACATATAGCCTAAATCGTCATATGAATGTTCATAAAGCGGTGGGAAAACCTCATGAATGCATCAAATGTAAATACCGTTTCTCCACAAAAGCTCATCTCAAACGTCATGAACTAATTCACGACACTGAGTTGCAAAACGTTTTTTCATCCACGGATGCGCCCAACAATCCAGAGGGCTATAAATGCAGCGATTGTCCTAGGCGTTTTGCCAAGCGTGAATCCCTTTCGGCCCATAGACAATCGCACAGTAAATTAGTTGATAGCTCAGAAGAATCACAGAAGGTGTATGCATGCAATTTGTGtccaaaacaatttaataaattgaaccAGCTTACGCGACATTCACGTATTCACGcagaaaataaacattttaaatgtcacCTTTGCGACAAAGCTTTTGGACTAAATGCGCACTTGGTAGATCATCTTAATAAACATAACGGCGTTAAACCTTACGTTTGTAATTTCTGTAGCAAAgCGTTCCAACAATCTTGCACTCTAAAGGACCACATACGCACACATACTGGCGAACAACCATATCTATGTTCTGAATGCGGCAAAGCCTTTAACAGTTCAAGTAATATGAAGCAGCATCTTTTGCGTCATACCGGCGAAAAACGTTACGAGTGTCCAGAGTGCCCGAAAAAGTTTCCTTGTCTTAGCGATTTGGGTTCACATATGGCTGTGCACAATAAAGTTAAGCCGCATGTTTGTGATATTTGCGGTGCTGCATTCGGCAAACCATACCagctcaaaaaacataaaatgtatCATAATGGAGAGAAGCCGCACAAGTGTGAATACTGCGAAATGAGATTCGTCTGCGCCGATCATATGCGACGACATATGCGCACACATACTGGAGAAAAGCCATACAAGTGTAAATATTGCGAGCGAGCTTTTGCTCAAAGCAATGATTTAGTCAAGCATTTGCGTTCGCATGTCGGTGAAAATGTTTACAAATGCGAACTATGCCCGAAAGCGTTTCGTCTTGCAACGGAATTGCGTGAGCATTTTGCGCAACATAAAAACGACGATGAAGCAACGCGTGCTAAAAATGCTCTAGCACTGGTGAATGAGGATACTATACGACATAGCATAGGCGCTGAACAAAGCGCTCAGAACATGAATACCGCAAAAGTTGCACTtgaaaaaatagcttaa
Protein Sequence: MEEESFPEKLFSRTCRTCMCKVASEDNKVLQSIFVAPNEDETVRIVDLLISSTPQLTFDATDQLPKEICAHCLSRVLSVHQFQQMCLRSDAHMRSLLDYNSVEDKFTEAPEILEPLTEDPLQSAIADTTPLLEFHGELKTCLKLELQEEDDEEQNCVINVVIEEDASKTLEVAEIEIEENKIAAEITVNNIGAASDCGSTDYKSDQVTDSDWEEENGKTPNPKNRRTASLPCPDCGKIFDRTYSLNRHMNVHKAVGKPHECIKCKYRFSTKAHLKRHELIHDTELQNVFSSTDAPNNPEGYKCSDCPRRFAKRESLSAHRQSHSKLVDSSEESQKVYACNLCPKQFNKLNQLTRHSRIHAENKHFKCHLCDKAFGLNAHLVDHLNKHNGVKPYVCNFCSKAFQQSCTLKDHIRTHTGEQPYLCSECGKAFNSSSNMKQHLLRHTGEKRYECPECPKKFPCLSDLGSHMAVHNKVKPHVCDICGAAFGKPYQLKKHKMYHNGEKPHKCEYCEMRFVCADHMRRHMRTHTGEKPYKCKYCERAFAQSNDLVKHLRSHVGENVYKCELCPKAFRLATELREHFAQHKNDDEATRAKNALALVNEDTIRHSIGAEQSAQNMNTAKVALEKIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -