Tfer019572.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tetanocera ferruginea
Gene Symbol
-
Assembly
GCA_958299015.1
Location
OY282641.1:104665302-104670133[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 1.9e-05 0.0032 19.2 2.1 1 23 295 317 295 317 0.97
2 15 8.1e-06 0.0014 20.4 0.4 1 23 323 345 323 345 0.97
3 15 0.00039 0.066 15.1 0.5 1 23 351 373 351 373 0.96
4 15 1.3e-05 0.0022 19.7 3.1 1 23 379 401 379 401 0.97
5 15 3e-05 0.005 18.6 4.7 1 23 407 429 407 429 0.99
6 15 5.5e-05 0.0092 17.8 5.7 1 23 435 457 435 457 0.97
7 15 2.6e-07 4.3e-05 25.1 4.3 1 23 463 485 463 485 0.98
8 15 9.7e-08 1.6e-05 26.4 2.4 1 23 491 513 491 513 0.97
9 15 5.6e-05 0.0094 17.7 6.7 1 23 519 541 519 541 0.97
10 15 1.5e-06 0.00026 22.6 7.9 1 23 547 569 547 569 0.98
11 15 5.8e-07 9.7e-05 24.0 7.7 1 23 575 597 575 597 0.98
12 15 0.00018 0.03 16.1 9.5 1 23 603 626 603 626 0.95
13 15 0.00015 0.025 16.4 0.5 1 23 632 654 632 654 0.97
14 15 0.00068 0.11 14.3 4.4 1 23 664 686 664 686 0.98
15 15 8e-06 0.0013 20.4 1.6 1 23 692 715 692 715 0.96

Sequence Information

Coding Sequence
ATGAATGTGAGTCAGGCGACAAACAAAGGCACTTCTTCTTCGTTGTCAATCACGAAGGCTGCTACAGAAAGTGAATCTAATACCAATAACGGCAGCGGTGTAACAGCACTGCAAATACCACAACCAATGTTGACTAACGCCTCAATTGCACAACAGCTACCAAATGGTACAATTATAACACAGAGACATCCTTCAGCAGAACAGCAACAGATGCACGTTCATGCGATGTCTACTTCTGATGATAATAGACAACATGTTCCACAACAGCATGTTGCTATTCAGCAACAACAACCCCATCAACAGGACAATTCAAAAGATGATAAATCTTATGTCACTAATGGAAAAGTTAACCAACAAATGATCATACAGCAagtaacaacaccaacaacatcgaCAACATCCTCTGGAGGCGGAGCAACTACCATTACACTTGGACCCACGAAGGTTGAGCATAAAGATCAGCATGATCAGCAGATGGGTAAACCGCCACCAGGAATAGAGATGTACAAAGTCAACATAGAAGATATTTCTCAATTATTTACTTACCATGAAGTATTTGGAAAGATCCATGGTGAAGTTATGAATCATCAAATTAACGCACACTCAGTTGCTCATCCAAATACAGCCACTATAACAACAGCCGGTAATTCTGCAGCTACAAtttcaacaacaaatacaacttCTGGTTCGGGCATCACTCCACCTGTAACTACGTCCAATCTAACATCAACAATCGCTAGTGGAACGACAACAGTGACAACAGCTGGTGATGGTGGAACAACAGGAGAACTTCTTATGCCTAAAATGGAGGGCGGCCTCGCTGTTGATCAAGCTACTACAATAACATTAGCACCTGATGGAACTCCCATTGCTACTGGTAACCACGTCTGTGACATTTGCGGAAAGATGTTTCAATTTCGTTATCAACTTATCGTGCATCGACGCTACCACAGTGAACGCAAGCCTTTTAATTGCCAAGTATGCGGGCAAGGCTTCACGACATCTCAGGACTTGACACGTCATGGAAAGATTCACATTGGAGGGCCGATGTTCACATGCATTATTTGTTTCAATGTTTTTGCGAATAACGCTAGCCTTGAGCGTCATATGAAACGTCATTCGACTGACAAACCATTCGCTTGTACCATTTGCCAAAAGACATTTGCACGTAAAGAGCATTTGGATAATCACTTTAGATCACATACTGGCGAAACACCTTTTCGTTGTCAGTACTGCGCCAAAACATTCACTCGCAAAGAGCACATGGTCAACCATGTACGAAAACATACTGGAGAGACTCCACATCGTTGCGATATATGCAAGAAGTCGTTTACGCGTAAAGAGCATTATGTTAATCATTATATGTGGCACACCGGTCAAACTCCACATCAGTGCGAAGTTTGTGGAAAAAAGTACACTAGAAAAGAGCATTTGGCCAATCATATGCGTTCTCACACTAACGATACACCCTTTCGTTGTGAGATTTGCGGCAAGAGTTTCAGTCGAAAGGAACATTTCACCAATCATATTTTGTGGCACACAGGAGAAACTCCTCATCGTTGTGACTTTTGCTCCAAAACTTTTACACGCAAGGAACACTTGCTTAATCATGTTCGACAGCACACCGGTGAGTCTCCGCATCGCTGCACCTATTGCAAGAAAACTTTCACCCGAAAGGAGCACTTGACCAATCACATACGCCTTCACACCGGCGACTCGCCACATAAATGTGAATATTGTCAAAAGACATTCACACGAAAGGAGCATCTCAACAACCATATGCGTCAACATTCAAGTGACAATCCACATTGTTGCAACGTATGCAACAAACCGTTTACGCGTAAAGAACATCTTATCAATCACATGTCTAGATGTCACACTGGTGATCGCCCCTTTGCATGTGAGACATGCGGCAAATCTTTTCCATTAAAGGGAAATCTTCTTTTCCATCAACGCAGTCATACCAAGGGCCAAGAATGTGAACGTCCATTTTCATGCGAAAAATgtcccaaaaattttatttgtaaagGTCATCTTGTTTCGCATATGCGTTCACATTCAGGAGAGAAGCCACATGCTTGCACTTTGTGTAGCAAGGCCTTTGTTGAGCGTGGAAATTTGAAACGTCATATGAAAATGAATCATCCCGATGCTGTTATGCCACCTCCACCAGTACCGCATCCACAAATTCCAGCTGGAATATTGACATCAATTAAACAGGAAATAAACCCGATTATAAATACATAA
Protein Sequence
MNVSQATNKGTSSSLSITKAATESESNTNNGSGVTALQIPQPMLTNASIAQQLPNGTIITQRHPSAEQQQMHVHAMSTSDDNRQHVPQQHVAIQQQQPHQQDNSKDDKSYVTNGKVNQQMIIQQVTTPTTSTTSSGGGATTITLGPTKVEHKDQHDQQMGKPPPGIEMYKVNIEDISQLFTYHEVFGKIHGEVMNHQINAHSVAHPNTATITTAGNSAATISTTNTTSGSGITPPVTTSNLTSTIASGTTTVTTAGDGGTTGELLMPKMEGGLAVDQATTITLAPDGTPIATGNHVCDICGKMFQFRYQLIVHRRYHSERKPFNCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIICFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQECERPFSCEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAVMPPPPVPHPQIPAGILTSIKQEINPIINT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-