Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 2.9e-13 4.2e-10 40.6 0.1 3 44 139 180 137 181 0.93

2 3 1.9 2.7e+03 -0.5 0.0 18 39 201 222 188 227 0.81

3 3 4.3e-09 6.1e-06 27.2 0.0 7 43 253 289 247 291 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	2.9e-13	4.2e-10	40.6	0.1	3	44	139	180	137	181	0.93
2	3	1.9	2.7e+03	-0.5	0.0	18	39	201	222	188	227	0.81
3	3	4.3e-09	6.1e-06	27.2	0.0	7	43	253	289	247	291	0.82

Coding Sequence: ATGAACACTGAGAGCGATGTAAAGACTAACAACAACATATATTTTACCTTTGAAAATCGAAAACTTCCACAGCATATTTTTGTACACTTGAACTGTGATGACGCCATTGATACCAATGGCGATATAATGCAAGACAATAAAGAGATTTTATCAAGTACCAAAGAAGATTTTAATCATGATGAACATGAAGACAATAATCCGCACGTTTCGACCCACGAGCCAACAGATCATATGCTCTGTGACACAGACAGCATGAATAATATGGATTTTGAGAGCGTGGTAGCGGAAGCATGTGATGGTCTATTTGATGACATAGAAAACGATCTGGATTTGAATTTAAAAGATGATCAAAACTCAACATCATCTATAGACTTTTGTGAATGTGTTGTTGGTTTAAAGGCAAAAAGAGACTCTGAAGCGATGCAAATGGCTGTTTCGGCAGTGCTGAACGAAGGTATGAGTCTTGGTCAAGCAGCAAAAAAATACAGCGTTGTTAAATCCACCATATGGTCAAGAGTATCAAAACATCCCAAACATCGTcgtagaaaaataaacaaagagcTCGCAGAAGTTATACACAGCAAACTTTCAGCTGGTGAGTCGCTATCTGAGATTTCAAGATCGCTTAACATTGCTAAGTCAACAGTGCATCAGCACAAGACACGTCTTACAAAGTATGGCAAGCTGCCAACTGTGTTGATTTTAAAGAAAGACAGAGAAGGCAGCGCAAATGGTGGCATACAAGATCGGCTAATGCAGGCTTATCGCGGCTGCCGCGTAAACGGAATGTCGGTGCGTTTTGCTGCTGAATTCTATTCAGTTCCACTAACAACGCTCTGGCGTTTTATCAAGCGGAATCAAACTGCAACACAAAACACGCTACCAAAGATGGAACCAATCGCGTCATGTGAGCCTAGTGAAGAGCATCTTGACAAGACACCTGCAGCTTTTGCGGAGAGTGCAGATAATGACGGTTTAGTGATGACAGATGAAATTAAAACAGAATTAAATCCCGAAGATCAACAGCTTTTTGAAGACACGTACTTAAACCATTTGTTTGAATAA
Protein Sequence: MNTESDVKTNNNIYFTFENRKLPQHIFVHLNCDDAIDTNGDIMQDNKEILSSTKEDFNHDEHEDNNPHVSTHEPTDHMLCDTDSMNNMDFESVVAEACDGLFDDIENDLDLNLKDDQNSTSSIDFCECVVGLKAKRDSEAMQMAVSAVLNEGMSLGQAAKKYSVVKSTIWSRVSKHPKHRRRKINKELAEVIHSKLSAGESLSEISRSLNIAKSTVHQHKTRLTKYGKLPTVLILKKDREGSANGGIQDRLMQAYRGCRVNGMSVRFAAEFYSVPLTTLWRFIKRNQTATQNTLPKMEPIASCEPSEEHLDKTPAAFAESADNDGLVMTDEIKTELNPEDQQLFEDTYLNHLFE

Sequence clustering based on sequence similarity using MMseqs2