Basic Information

Gene Symbol
JARID2
Assembly
GCA_958299015.1
Location
OY282644.1:100280633-100294119[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.1e-22 2.5e-18 67.7 0.0 6 89 1942 2023 1937 2023 0.92

Sequence Information

Coding Sequence
atggtgGTCTCCAAAGACTCCAAGCGAAAGCGCAAGGAGTCGCCGCCACCGCAGCCGCCAATGATTGAATCGTCGCCAGAAATGCCAAAAAGgACAAAAGTGCAAGCTCAACGCAAGTTTGCTCAAGGGCAAAGTGCTCCAACATCTTCGTATACAGCAGCTCTAGCAGCTTCATCCTCTTCCACAACAGGTGGACCTAGTGCATCTTCCGAAAGTCGAGAACCACCTACAGAAATATTACCGAATAAAAGACCGAAAACTGAAGATTTCTTAACGTTTCTTTGCTTTCGTGGAACTTCTACATTGCCAGCACATTTAGACTTTTTAAATCAAGGCAAGCCAGCAGAACCTGAAAAAAATACAgataaaaagaaaagcaaagttatagcaaaaactaagaaaaagcCAATAGCAAAAAAAGGTGGCAAAAAGGCAAAAGCGGCCAAAGAACCTACTAAAGCTGCGGATGATGAGCCAGTGGCATCAACTTCAGCGGCAGCAGCTCTACTGGCCGAAAATAATAACTCCGCTACTAATAACGATGGTCCAGCTCCTCCTTTAGGGAGTActaatgaaaaatcaaaaaatcaaaacgtaGAAAACGAAGAAAaccaaacagaaaaaatttctagtattcCTCCAGAAGAGGAACCCTTTAGCTTGGCTTCTCCGAGCAAAAAAGTAGCAGCACCTGAGCCACCGATGGAGTTAGGAAATCCACGTAGTCGTGCAACCACGGAAAAGTCAAAAGCTGAAGTCGTTTCTAGCAAATCACCCGAGAATAAACGTCGTTCTAATCGCTCTACTGTGAAAGATATGAAACAGTTAACCGAACCTGAGACTGAGGAAGAAAATTATGAACAACCTGCTGCTAATGTCACAATTGAGCAGCCAACAGAATCAAAAAATGCAAAAGatgagcaaaatattaaaaaatcaaaaactccaACTCCTTTAGATAACCAAACTGCTTCAACTCCAACACAAGAACAAGAAACGGGCAATGCTACTATCCCAATGACAAAAGCTAAAAAAGGCAAAGCGGCTGCAGTCAAAAATATTGCCACAGATACCATTAAGCATAACATAGGCGAGAACGAGCTAACTAAGGAATCTCTAAATGTAACGCAAAAAGTAGAACAACTACCTGCTGCTGCAACTGCAAAAGCAAAACAACCAATAAAAAGAACTCGACAAAAAGAATCGCCAATTTTTATTCCCTCACCGGAACCAACTGGACGCATGACAAGACAACGCGCTTTTTTTGAGCCTGTCAAAGTGCTACCACGTGATAATGTCGAAGAAACTGAAGAGCAGTcggacaaaaatttaaaatctccaCCAAAAATTGTGATAGAATCgacagtagcagcagcaacaacatcaacagcaacagaaaaacctaaaaaacttGATATAGACATTGAAAAAGCTACTGCTAAAAAAATTGAGGaacctaaaaaaataaatcctgaGGCAACAAAGCCAGAAGAAAAAAGTAATTCTCTAAATGTGTTTGATTTCTCGTCGGAAGATGAACAGCCATTGTCCAaatcaataaaactaaaaaaggaGACTCTACCAGTCAGTCCAAAAAAGCCTGCACAAAATGTCAAACGTAAAGGTAAAAAGTTAACTCAAAAGAAACCAATTCTACAAGAAGCTAAACTAATTGAAAAGGAGAAAAAGGAGAACATAGatttgaacgaaaaaacaaCTGAAgagcaaaaagaaaaagaaacaactATTGAACAAAATGACGAAAAATCTAAGCGTGTTGTTGGAAAAGctgcaaaaaagaaacaaactgCTGTAGAAACTGAAACTGCCGAAGTGTCAAAGCAAGAGGAGTCTACCGCAATTATTGATGAAATTCCAGCTATTGAAAAGAAAACTCCGCCGACTGCACGTCAGTCACGCAAGCTAAACAAAGCAAAATGTGATCCCATCACTTCTAATGGCACAGCTCCAAATGAAGAAAGTGATGCGAACTCACCGATGGCACCAGTACGTAGCCAGCGTCCATCACGCAAGACTAAAGAAGCTGCTGCCATATATATGGGCATTATAGGCCATAAACTGCAGCAGAATGAAGACGAAGATGATGAGCTGTCATTAAATAGCTTTCCAGATTTACCAAATGTCAAAGAAACAGAGAAAATGGAATTTGAATTGAAGAAAAACGCGGCCACTTCACCGCCAACCACGGCAAAATCACCAACAAAATCAACTGCTGCAGCTGAAATGGAAAAACAAGCTCCAGCCCCACGTCGTGGACGTCCACCTAAACAGGGCAAACCGCCACCTCCAGCAAAACGTGAAATTGAAGgcatgttaataaaaaaaggcGCCCTAGCAAAGGTTATCTCCATAAACACACAACCCGATAAGTGTAACAATGAAAAACAACAGCTGGACTCCGCTAAAGTTGACGAAGAAGATGAGGACTTTCTGCTTAACGAAGAAGTCAATGAGACAAAACGTAAATTAGAGAAAAGTTTCAGCGATTCGGATGATGAGCCGTTAGCCGTCAAAGTAAATCTTAAATCAAGTGATAAAGATGTGGAAAATGATTCTAGAAAATCTGACAGCGGACAACGTGCCAATGTAGCAACTACCTTAACAATGTTTCCCATAAGCGGTGGTGCTCAACAGCTAGCTGTGTCTACGCCACCACTCGGCAATGCTACTGGTGGTTTGTCAACAAATACTTCACCCATAACTGCTGCAAACACTACACCACTAAATGCATCACATTCACAGCCAAGTTTTTTCAAAGTCACTGAGAAGAAATCTCCCATACCCaatgctaaaattttaaatgttcctGCTGCATATAACCTACCAGCGACAACTCAGAATTCACAGAATTCACAGAATTCTTACATTAATAAAATGGAACACAAACTTATTTCACCCAATCTAACATCATCATATCTGCCACCGGCATCACCACATTATCATGTATCTCACTCAACAGCCAGACCATCGCCGCATCCAGCTTTACAAACTGCGAAATCTCCCACACAACCGCCACCAACTCTACCAACACTCTTGACGCATATCGCAGCGCCACCTCCTCCACCACAATCacctttaaaatatcaaacgccTCCAACAACATATCCGCCTCCAATTGAAGCTTATCCATCTCCAAAAATCAATCCTAATTTTCTTACGCCAAAATTTGATCGTTCAGCGTTGCCACGCACAAATAACTTTCCCTCACCCTCACCCGTCAAATTCGATTTGTCTTCGTCGACAACAAAAACAGGTGGCATAGCCAACTCGACGCTGAGTCCAAAGACGCTACCAACTATTGCCGTCGGCTATAATGCTGTGCCGGGCCTGGTGTCTACGCCAACAACATCTTCAGCCGCATTGGCAGGTGCCGCTGCCGGTGCAAATGCATCCTCAGACCCATTGAAAGATGAAATTGGCTCCATATTAGCCGCAAATCTTATGCCCAGCAAGGAAGAGTCGGGGAAAATCTTTGGCATTGCTAGTGTGAGTCTGGCCCAAAGTTCCGGTCCAGATAATACCAAGTGCACGCTAGGCAAATGTGGCTCCATACACAAACCGGTACTAGGGCCGGTAGTTCCCACCGAAGGCTACATTGGCGATCAACTTTCCAGCAAGGAACGGCGCAAAGCCAAAGTCAACATGACGCAtgaacaaattcaaaaatggCTCATAGAGTGTTCCTCGAATCCAGATGAAATACAAGATGACTTGGATGATGACTATGACGACAACTTGCGTCCAAATCTATTTGCCACCACGCCACCACCCACCAGAGATGACAAGGAAAGCACTTCATTCAGTTCCTCTTCAAAGGCTACCCGCGACCTAGGCAAGAGTGAGAGTGCCTGGTCTGGCAAAGGTCCTTCACTAAAAGCTATACCAGTTGTGGCCACAACAAACACAAAGGAAGACGACAAACGCAGTGATCACGTGTTGTTACCACAACTGCAACCAACAACAGATAACGAGCTGCCCCAAGTTAGCAGTCAAACGACAAAAGCAACCCCAGGCAGCGTCAAGCAAAACTCTGGCAATGTTGATACTAAATCGTCAAAAGATAAGTTGCTAGAGAGGCGGGTAGAGAAGAAGTCAAAAGAGGAAAAACCATGCAAGGAAGCAATTAAAGAAAAGGAACCAAAGCAAAGCAGGGCCGATAAAGAAAAAGAACACGTTGTTGCATTGGCCAACATAAAGACGACTGCTGCTGGCAAGCAGTCAAGTTCAACGCAGCAAACAAATAATACGCTTGAATtgtcaacaccaacaacaacaccagccgTCGCCAAACCGAATCGCAAAAAGaatgcaacagcagcaacaccaacaactcCCAGCGCACGCGAAGAAAAGCAAACGGCGCAAAAGTCAACAATTGCTCACGCGAGCGTTACGTCGCCTAGTagcaaaatacaacaaaaacgtACACCAGTCTATAATCAGAAAGCTACTCAGAAGCAAGTCGAACTTAAAGAAACCACTACAACCAGTCATAAAAAGAAGTCACCGTTTTCGTATACCTTCGGTGCATTTTCGGTAGAAAATGAAAAGTCAATTTATTCCTTTGATAAGGACGATGATGATGCTGGTGCCAACAAACCAATTACAAAGCCAGTGTTTAGACGACAAAGTCGACGCGACTCGCTACCAGATGATATGGCGCCATCTACGCCTACGCCAACACCACGTGTATCACCTGCAAAAAAGCGCAATGCTGGCGGCGCCGTAACTACAGATAAACCACATGCTAAAGATGCTGCAAATGCATCGCAAAGCAGTTCCGTTTCATTGACACTCAGTCCTGCAGAAAATTGCAAGTTGGTCAAAGTAAGCCTGGAGGCAGAGCAACAGCATTCAACCACCACAACCAAAACAAAATCAGGCAAGTTCAAAAACAAGCCCAATGTGCCAACAAAGCAGCCTGCAGAAACTGCTGCCGCCGATTCGGATTCTGATGGTCATACCTTCTACATACCGCTGCAGGGCACTGGTACCGGTGGATTGGCCGAAGGCGGTATTCAGGGTGTTGCTGTAAAACTGGGTCGCGAAGGTCCCGAAGGTCCAAATCAGAAAGTTATCATGCACGCAACACTAGTCACAAAAGCGCAAATGGGTCAAAACTCCAAACCACTGCCAGATTCCATGAATGCCTCGGAGATTGTTAAGAATCTGCTTATATCTTCGGCTGGCTCTTCAACTGtcgaagcaacaaaaaaatcatctaATTCCTCGAATGCTGCTGCAGTTGTAGCCAGCACATCATCTGCTGCGGCGGCTATTAATTCCGCTTCAAACAGTTTGAAGAGTGTGCCAATTGGTACAGTGCAGCCACGTTTTAAGGGCACTGCAGATCCAGCTGCAATAACCACTGTTCAACCCAGCACTTCAACGGGTGCTAGTGGCGGAGGTGGCTTAGTGCGTGTCAATTCCAACTCCTCACTATTTTCCGGCTCTGCAAAGTCTAGACATGGTAATGCCGGTCCAGCCGCAGTTAGCAGTACTAGCAAGAAATTTAAGGATGACACACCCATTAAAATGTCGAATAACACTGCATTTCCGCGTCATGATGATCCCACACAAATGGTTGAAGCACCCATATTTAGACCAACTGAGAAAGAATTCTCTGATCCTATGGATTTTATTGAGCGCATAACACCGATTGCTGCGCGATTTGGTATTTGCAAGATCATACCGCCTGCTGCTTTTAAGCCAGAATGTCGCATATCGGACGAAATGCGCTTCACCGCCTACAATCAGTATGTACACAAAATGCTGCACCGTTGGGGCCCCAGCGCCAAAGAGCTCAGTGCAATTAAAAAGTATTTGGCTACACAGAGCATTGTTATGAATCATCCGCCCTGGATTGGTGGCATGGAAGTTGATTTGCCGCGTTTATATCACACAGTTCAAGAGCTGGGCGGACTTAAGGAGGTTATTGAGAAGAAAAAGTGGGCACGTGTTGCTGAGGAAATGTGCATTCCAAAACTAGCGCAGGATCGCGTCACAAAACTGGATGACATTTACTGTAAATACCTGCTACCTTATGACACGCTCTCGCCAACTGAACGGCAAaagttatttgacgaagttgaAGCTGATTGGGCAAAGCGGGAGGCGCGTGCTCGACGTAATGCTGATCGTTTTGTGAATACCGAAAGTGTATCGAATGAAGAAGATGATGTGTCTTCGGATGATGATGAAGAGTCTGAGGAAGAGGTTGATGGTGTTTCTATGGAATGTATTGTTAAGGGGCGTAGTATGCCACTCAGTCAATTTTATCGCATTGCGCGCAACACAATGACACTGTGGTTTAAAAATACTGAACCCACAGTTAATGAAGTGGAGGCCGAATTCTGGCGTCACGTTGCAGTGCGCGACAGTCATGTCTGTGTACATTCCGGTTCTATTGATTCATCTGGCTGGGGCTATGGTTTTCCATCGCCTGGCCCTAAGGGCAAAGGCTCTAATTATGCACGCCACCCATGGAATCTTAAGGTGCTCACCAACAATCCAGGCTCTGTTTTACGTTCGCTTGGTCCAGTCATGGGTGTTACAGTGCCAACACTACACGTCGGCATGCTTTTCTCTGCATGCTGCTGGTATCGTGATCCACATGGCCTTTCCTGGATTGAGTATCTACATACAGGCGCCTCCAAGCTTTGGTATGGCATACCAGATGATCAAAGTGCTAATTTTAGAGCTGCCCTTACTTCACTCATTCCAACACATTGTCAAAATAAGACCATCTGGTTGCCTTGCGATACGGTAATGGTGCCGCCTCATATGCTCACCGATCGTGGTGTATCGCTGTGTAGAATCGAGCAAAAACCAGGCGAATTCATTGTGGTTTTCCCACGCGCATACACTTCAAGTTTAGCAACCGGTTATGTGGTTTCGGAGAGCGTCTACTTCGCAACTAACTCTTGGTTAGATCTAGCAAAAGAAGATTTTAGGGACATACACGATAGCTGTGAACCAGCCATGTTTTCTTTGGAACAGCTGCTCTTCGCCTTGGGCTCTGATCAGCGGGTCTCTCCTGATACATTGCAACAAATGTTACCAATGCTTAATGAAGTTTTCGAGAAGGAAACCGCTGCCAGGGAAcaattgaaaGCTGCTGGTGTTACATCAACCGAAAAGGTGCCAACTGAAAAAGgctcaaaatcgaaaaaacaaCATCCTGTGAAATCAATCGAAAGCGAGTGTGACTTATGCAGAGCGAATTTATATATCTCTATGGTGAGAACTGACGAGGGCAATGTGTACTGTTTGCAGCATGCACTAAAGAATCTAAACAATGGCAATATTCAAGCtaaacaatgcaaattaatttttgcctATCACATTGAAGATATTGAAAATCTTATTAAAAACCTGAATGACAAGATTCAACAGAAGCGCACTAGCAATTCAAATAAGAAATCAAAGTAG
Protein Sequence
MVVSKDSKRKRKESPPPQPPMIESSPEMPKRTKVQAQRKFAQGQSAPTSSYTAALAASSSSTTGGPSASSESREPPTEILPNKRPKTEDFLTFLCFRGTSTLPAHLDFLNQGKPAEPEKNTDKKKSKVIAKTKKKPIAKKGGKKAKAAKEPTKAADDEPVASTSAAAALLAENNNSATNNDGPAPPLGSTNEKSKNQNVENEENQTEKISSIPPEEEPFSLASPSKKVAAPEPPMELGNPRSRATTEKSKAEVVSSKSPENKRRSNRSTVKDMKQLTEPETEEENYEQPAANVTIEQPTESKNAKDEQNIKKSKTPTPLDNQTASTPTQEQETGNATIPMTKAKKGKAAAVKNIATDTIKHNIGENELTKESLNVTQKVEQLPAAATAKAKQPIKRTRQKESPIFIPSPEPTGRMTRQRAFFEPVKVLPRDNVEETEEQSDKNLKSPPKIVIESTVAAATTSTATEKPKKLDIDIEKATAKKIEEPKKINPEATKPEEKSNSLNVFDFSSEDEQPLSKSIKLKKETLPVSPKKPAQNVKRKGKKLTQKKPILQEAKLIEKEKKENIDLNEKTTEEQKEKETTIEQNDEKSKRVVGKAAKKKQTAVETETAEVSKQEESTAIIDEIPAIEKKTPPTARQSRKLNKAKCDPITSNGTAPNEESDANSPMAPVRSQRPSRKTKEAAAIYMGIIGHKLQQNEDEDDELSLNSFPDLPNVKETEKMEFELKKNAATSPPTTAKSPTKSTAAAEMEKQAPAPRRGRPPKQGKPPPPAKREIEGMLIKKGALAKVISINTQPDKCNNEKQQLDSAKVDEEDEDFLLNEEVNETKRKLEKSFSDSDDEPLAVKVNLKSSDKDVENDSRKSDSGQRANVATTLTMFPISGGAQQLAVSTPPLGNATGGLSTNTSPITAANTTPLNASHSQPSFFKVTEKKSPIPNAKILNVPAAYNLPATTQNSQNSQNSYINKMEHKLISPNLTSSYLPPASPHYHVSHSTARPSPHPALQTAKSPTQPPPTLPTLLTHIAAPPPPPQSPLKYQTPPTTYPPPIEAYPSPKINPNFLTPKFDRSALPRTNNFPSPSPVKFDLSSSTTKTGGIANSTLSPKTLPTIAVGYNAVPGLVSTPTTSSAALAGAAAGANASSDPLKDEIGSILAANLMPSKEESGKIFGIASVSLAQSSGPDNTKCTLGKCGSIHKPVLGPVVPTEGYIGDQLSSKERRKAKVNMTHEQIQKWLIECSSNPDEIQDDLDDDYDDNLRPNLFATTPPPTRDDKESTSFSSSSKATRDLGKSESAWSGKGPSLKAIPVVATTNTKEDDKRSDHVLLPQLQPTTDNELPQVSSQTTKATPGSVKQNSGNVDTKSSKDKLLERRVEKKSKEEKPCKEAIKEKEPKQSRADKEKEHVVALANIKTTAAGKQSSSTQQTNNTLELSTPTTTPAVAKPNRKKNATAATPTTPSAREEKQTAQKSTIAHASVTSPSSKIQQKRTPVYNQKATQKQVELKETTTTSHKKKSPFSYTFGAFSVENEKSIYSFDKDDDDAGANKPITKPVFRRQSRRDSLPDDMAPSTPTPTPRVSPAKKRNAGGAVTTDKPHAKDAANASQSSSVSLTLSPAENCKLVKVSLEAEQQHSTTTTKTKSGKFKNKPNVPTKQPAETAAADSDSDGHTFYIPLQGTGTGGLAEGGIQGVAVKLGREGPEGPNQKVIMHATLVTKAQMGQNSKPLPDSMNASEIVKNLLISSAGSSTVEATKKSSNSSNAAAVVASTSSAAAAINSASNSLKSVPIGTVQPRFKGTADPAAITTVQPSTSTGASGGGGLVRVNSNSSLFSGSAKSRHGNAGPAAVSSTSKKFKDDTPIKMSNNTAFPRHDDPTQMVEAPIFRPTEKEFSDPMDFIERITPIAARFGICKIIPPAAFKPECRISDEMRFTAYNQYVHKMLHRWGPSAKELSAIKKYLATQSIVMNHPPWIGGMEVDLPRLYHTVQELGGLKEVIEKKKWARVAEEMCIPKLAQDRVTKLDDIYCKYLLPYDTLSPTERQKLFDEVEADWAKREARARRNADRFVNTESVSNEEDDVSSDDDEESEEEVDGVSMECIVKGRSMPLSQFYRIARNTMTLWFKNTEPTVNEVEAEFWRHVAVRDSHVCVHSGSIDSSGWGYGFPSPGPKGKGSNYARHPWNLKVLTNNPGSVLRSLGPVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRAALTSLIPTHCQNKTIWLPCDTVMVPPHMLTDRGVSLCRIEQKPGEFIVVFPRAYTSSLATGYVVSESVYFATNSWLDLAKEDFRDIHDSCEPAMFSLEQLLFALGSDQRVSPDTLQQMLPMLNEVFEKETAAREQLKAAGVTSTEKVPTEKGSKSKKQHPVKSIESECDLCRANLYISMVRTDEGNVYCLQHALKNLNNGNIQAKQCKLIFAYHIEDIENLIKNLNDKIQQKRTSNSNKKSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01180943;
90% Identity
-
80% Identity
-