Tscr004205.2
Basic Information
- Insect
- Tenthredo scrophulariae
- Gene Symbol
- -
- Assembly
- GCA_963978835.1
- Location
- OZ022228.1:5153088-5156311[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.23 28 6.2 0.1 1 22 606 627 606 629 0.86 2 10 0.0079 0.98 10.8 1.1 3 23 638 658 637 658 0.92 3 10 4.8e-05 0.006 17.7 5.4 1 23 664 686 664 686 0.98 4 10 0.0025 0.31 12.4 3.2 1 23 692 714 692 714 0.97 5 10 6.2e-05 0.0077 17.4 0.4 1 23 720 743 720 743 0.95 6 10 0.00062 0.077 14.3 1.0 2 23 750 771 750 771 0.97 7 10 0.00017 0.021 16.1 9.5 1 20 777 796 777 799 0.95 8 10 0.003 0.38 12.1 1.2 3 23 807 827 805 827 0.98 9 10 6.2e-05 0.0077 17.4 0.5 1 20 833 852 833 855 0.94 10 10 0.0014 0.17 13.2 0.9 1 23 862 885 862 885 0.97
Sequence Information
- Coding Sequence
- ATGACGTTATTGGTACCAGATATGTTTAAAAAGACATGCAGAACATGTCTAAACACAAATGGAGAAATGGTCCCGATCTTTTCGTCCGGCTTTTACGTTAAACAACTACCAAAGAAACTTATGGCTTTTGCTGAGGTCGAGatatcaGACAACGATCAACTACCCAAGATGATATGTAAGAAATGTATGTTCTTGGCAGATTCTTTCTACTGTTTTAAAGAGCAATGCGAATCCGCAGATAATCAGCTGAAATCATTGATTCAGAAAAATTATACACGCGATAATTCATCAAATGTAGATAATAAGCCAGATTCAAATGCTACGTGTAATCGGCCCGGAGTCGCGCTTATTACTAATTTCAAAAAGGTCATTACGGACGATAAATCCATGAATAATGAGACAACAAAGATGTTAGAAGTAACTGAGGAGGCGAaggataattattttattgaatatatatctGAGGAGGTCAGAATAAACGTTGAAAATGCATTTAAGAGAAGACAGGAAGCTGAGAGGAGAATAAGCATGGAAAAAGTATCTCAAAGTATAAAGAATCTCAAGGGTATCGAGGTGGTTCCAGTCAGCAATGTCAAATCTGCTCGTAGTGCGAGAAATAGTAGGACTGAGAAAGAGGAGATTGTTGTATTTCCTGTTAAAGTACCTGAGAAACGATtaagaataattgaaacaaTTGTTATAGACGATCTACCGCCGTTAAACAAGAGGCTTAAACTGCCTCCTGAAACTACAGTATCTAGAATTAATGGGAGTGATGTTAGGCAGGAGGATTCTATCGTATATGGTAAACATAGAAGGCTGAATTTTTCCACTGTTAGAAAAGTGGTGAAAATTGACGACGACGAACTATGCGTTGAACCAAAACAAGAGTTTATCAAAGAATCAGAGAGGGAAATTTCTCAGTTCAAATATGATACTGATGTAGTTGTTCTGAGTAATGATAATGTGGCAGATAATCGTCAATCTCAATATTCTAAGACTCAAATGAACAAGAAGGGATCAGAGATTATTTATGATGAGCAAGAGTCAAACGTAGTTAAAGCTAGACTTCAAGAGCAGTCaaaagatgaagagaaaaatataaaaacgcAGCTATTCCAGTTCTCAAATGGAAATATaccaaataataataaagattcTTCTCATTGTCATGAGAATGAGAAGCCACAAGATATTATTTCTGAAATGAATGCGGGtcaaaatgagaataaatcCACTCATTACCATTCAACAATTGAAAAACCTGTTGAATTCTTTCCTAGTTTAGAATCGAAAGATATAGAGAGGCAGAAAGTCGACTATAATCTACAGAATCATAATGTAATTGCAAAGTCTACTATTGGTTGTATTATTACCGGAATTGACAACCAAAACTTTGATGTTTCAGATGCATCAACTTTCAAAAATGGCAATGATAGTCTTAAGAGTTTTTCTGACTACAGAACGGACAGAAGTAACGAGTTCTTCATCCAGAATGAAGTAGGCGGCATCAGCAATAACTTCGCAACTGCTCGGAAAGAAATTagaaagaatttgaaattagaCTCAATTTCGTTTGCTGGTAATCAGAGGCGGGATTCTGTCGATAGTTCAAGCTTCTCTGATCAAGTGACGCCGCTTGCTTTACTGAGTGTTAATTCATCGGGGGAAGAAAACAGGACAATAAATTTGAGGATTTATAAACGTAATGATTCGGAGAGAATCAAGAGAACTGCGGAGGACGATTCTTGCGTGAAAGATCAAAGCCTGGTTCCACCTGCTCACCTAAACACCGGGAATCCGAATTTGAAGATCTATCAATGTACCGTTTGCTCAATCAACTTTGTTTCAATGCCGGATGTGTTGAAGCATAACGTACGAGAACACATGGCGGACCAGAGTCCTGTATTTTGCTTAATATGCGACAAAAGCTTCCAAGGTAAATCCCTACTCTGCGATCATGTGGGAGAACACAACGGGTCTGAACCCTACAGATGTACATTTTGCCCGAAGCAATTTACCCTGAAGAGAAACCTCAAGCGACACATAAATCACCACATCAATTACAGATCCTTTCAATGTCGGATTTGTATGAAAAGATTTACGGAAAAATTCTCCCTGAAATCCCACATGTATCTCCACAACGGAAACTCACCGTTCGCATGCCAAATTTGCAACGTTTCATTCAACAACAAAACTAACTGGCGAAGACACGTAGTGACCATTCATGAAAAACTCACCGTCGCTGTCTGCAAATTTTGTAACAAGGAGCTACCTAACAAAAGATCCCTTCGAGTTCATACCAGAGTTCACACCGGCGATAGACCTTATCAATGTCCACATTGCGACAAGAGGTTCACTCAGCAGTGTAACTTGAACACACATATTCATTGCCATCTGAATGATAGACCTTTTGGCTGTCCTCATTGCAATAAAGGATTTAATCAGCGAGGTACACGCGACGATCACATTCTTACACACACTGGGGAGAAACCGCATAAGTGTATGGAGTGTGATGCCAGCTTTACAGTTTCTTCAGCTCTTAAAAGACACATGTGGATCCATACGGACAAAGATCGACCCTATAACTGCGATAAATGTAGACTGCAGTTTATTGGGCTTTACGATTTGCGAAGGcatttgaaaattcgacatGGGGAAGTCAGCAAGCTGGATAATCCACGGGTTGAAAGAGTGCTAGTAGATGATGAAACCAAAGAGATTGACGGGTCAGATTCTTCTGGCGAATCTAAATTCAATGAAGCTGTTAAATCTTCCAGAGTCAGTGAATGCAGTGAGGCGGAAATAACAGCGAAGGAAAATAGCTCCTTATCTTCCAACGTTAATAAGATTGAAGATttagagaaagaagaaataaaggaatattttttggatacgaaaattgaaaacctCAATAACGTTGCTAAGAAAGAGATGGttaataattttgataatatgTTATCAGGAGGAGACATTGGGACTCTAAATCCTTGTGCCGATATCAATAAACATCGAGGGAAATTATAG
- Protein Sequence
- MTLLVPDMFKKTCRTCLNTNGEMVPIFSSGFYVKQLPKKLMAFAEVEISDNDQLPKMICKKCMFLADSFYCFKEQCESADNQLKSLIQKNYTRDNSSNVDNKPDSNATCNRPGVALITNFKKVITDDKSMNNETTKMLEVTEEAKDNYFIEYISEEVRINVENAFKRRQEAERRISMEKVSQSIKNLKGIEVVPVSNVKSARSARNSRTEKEEIVVFPVKVPEKRLRIIETIVIDDLPPLNKRLKLPPETTVSRINGSDVRQEDSIVYGKHRRLNFSTVRKVVKIDDDELCVEPKQEFIKESEREISQFKYDTDVVVLSNDNVADNRQSQYSKTQMNKKGSEIIYDEQESNVVKARLQEQSKDEEKNIKTQLFQFSNGNIPNNNKDSSHCHENEKPQDIISEMNAGQNENKSTHYHSTIEKPVEFFPSLESKDIERQKVDYNLQNHNVIAKSTIGCIITGIDNQNFDVSDASTFKNGNDSLKSFSDYRTDRSNEFFIQNEVGGISNNFATARKEIRKNLKLDSISFAGNQRRDSVDSSSFSDQVTPLALLSVNSSGEENRTINLRIYKRNDSERIKRTAEDDSCVKDQSLVPPAHLNTGNPNLKIYQCTVCSINFVSMPDVLKHNVREHMADQSPVFCLICDKSFQGKSLLCDHVGEHNGSEPYRCTFCPKQFTLKRNLKRHINHHINYRSFQCRICMKRFTEKFSLKSHMYLHNGNSPFACQICNVSFNNKTNWRRHVVTIHEKLTVAVCKFCNKELPNKRSLRVHTRVHTGDRPYQCPHCDKRFTQQCNLNTHIHCHLNDRPFGCPHCNKGFNQRGTRDDHILTHTGEKPHKCMECDASFTVSSALKRHMWIHTDKDRPYNCDKCRLQFIGLYDLRRHLKIRHGEVSKLDNPRVERVLVDDETKEIDGSDSSGESKFNEAVKSSRVSECSEAEITAKENSSLSSNVNKIEDLEKEEIKEYFLDTKIENLNNVAKKEMVNNFDNMLSGGDIGTLNPCADINKHRGKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01411820;
- 90% Identity
- -
- 80% Identity
- -