Tscr015809.1
Basic Information
- Insect
- Tenthredo scrophulariae
- Gene Symbol
- -
- Assembly
- GCA_963978835.1
- Location
- OZ022231.1:21887331-21888621[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00021 0.026 15.7 1.7 1 23 103 125 103 125 0.98 2 9 7.6e-05 0.0094 17.1 2.7 1 23 127 150 127 150 0.96 3 9 0.00042 0.052 14.8 1.0 1 23 155 178 155 178 0.95 4 9 2.3e-05 0.0028 18.8 3.5 1 23 184 207 184 207 0.96 5 9 0.00053 0.066 14.5 2.0 2 23 214 236 213 236 0.95 6 9 0.0001 0.013 16.7 0.5 1 23 241 263 241 263 0.97 7 9 0.00011 0.014 16.6 0.2 2 23 270 290 269 290 0.96 8 9 2.7e-05 0.0033 18.6 0.2 1 23 296 318 296 318 0.97 9 9 0.00024 0.03 15.6 0.4 1 23 324 346 324 346 0.97
Sequence Information
- Coding Sequence
- ATGTTGTTctgtatgaaatataatactGGAAAAATTAAGTACCCAGAATTGCGGGAGATTAAATTGATATCACCATCCGATCCCTTGAGTGTTCCGTCGGACGGAGTAGCTCTGGAAAAGAGGCAAGTTGTGAGAATCGAATGCACTCCCGAATACACGATATGGCCAAAGAAGCAAATCGTCGACGTTGTGATTGTAAGAACTAAGAGAGGTGAGGCGAGGAAATCGGAGATGGACAAGGGTGTGGGGACCGTAAATAAGAAGATCGAGAAGCCATTGCGAAGAGTGACCAGGACAAACAAGACTTTCGAATGCAATTCTTGCCAAAAGACGTTTTTAAAGAAGAGCAATCTAGCGGAGCACTTGAAACAACACAGACACAAGTGCACAGATTGCGAAAAGACGTTTAGCTTGAAGCGATACCTCGACACACACAtagaaaaaattcacagaCCTCAGCTCTACGAGTGTAGCGTATGTGACTACAAGAGCAACAACAAAGGAACTCTGAAGAATCATTTTATACGGCTCCATACCAGCGGTTTCAACTTCTCGTGCGATACGTGCGGAAAACAGTTCAAAATAAAGAAAGCTTTGAACCACCACATGAAACAAAATCACAGTGGTAATCCTCCCATAGTATGTGACGTATGTGGTCATTTTAGCAAAAATCTACACGCCCTCAAAGCCCACATGAAGTATCGCCACTACAAACCagcttttgagtgtaatatttGCAAACGAGGTATGACAACTCAGGAGAATTTGAAGCAGCATCTATCTTGGcacgaaaataaagaaaaggtCGTCTGTCCTACTTGTGGAAAAAGATTTCGCGGGCGTGATTTGGATTCCCACATGCGAGTTCACACTGGAATAAAACCATTTCCCTGTCTGGTTTGTGGGAAGACTTTCAGGCGACAAACTGCCCAGGAACAACACGTCCTTATTCATACTGGGAAACGACCCTACGTTTGTGATATATGCGGCCAGGCATTCGCCCAAAAACCTGGCCTGATTTGTCATAGAAAGAGACACCCTGGCCCTTTACCTCCGCTTCCCGCAGTGTCGATAAAAACTATAGTCACGGAATTTGCTAAGGAGTACGCCGGCAAGAACAGCGGGCAGGAAACAAGCGGATCAACATAA
- Protein Sequence
- MLFCMKYNTGKIKYPELREIKLISPSDPLSVPSDGVALEKRQVVRIECTPEYTIWPKKQIVDVVIVRTKRGEARKSEMDKGVGTVNKKIEKPLRRVTRTNKTFECNSCQKTFLKKSNLAEHLKQHRHKCTDCEKTFSLKRYLDTHIEKIHRPQLYECSVCDYKSNNKGTLKNHFIRLHTSGFNFSCDTCGKQFKIKKALNHHMKQNHSGNPPIVCDVCGHFSKNLHALKAHMKYRHYKPAFECNICKRGMTTQENLKQHLSWHENKEKVVCPTCGKRFRGRDLDSHMRVHTGIKPFPCLVCGKTFRRQTAQEQHVLIHTGKRPYVCDICGQAFAQKPGLICHRKRHPGPLPPLPAVSIKTIVTEFAKEYAGKNSGQETSGST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01048418; iTF_00938984; iTF_01049141; iTF_00719671; iTF_00939839; iTF_00175279; iTF_01411786; iTF_00174528; iTF_01200413;
- 90% Identity
- iTF_01411786;
- 80% Identity
- -