Tscr010032.1
Basic Information
- Insect
- Tenthredo scrophulariae
- Gene Symbol
- -
- Assembly
- GCA_963978835.1
- Location
- OZ022229.1:21959231-21961680[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.3e-05 0.0066 17.6 1.9 1 23 297 319 297 319 0.97 2 12 0.00084 0.1 13.8 4.6 1 23 323 345 323 345 0.98 3 12 0.00029 0.036 15.3 2.9 1 23 350 372 350 372 0.96 4 12 0.068 8.5 7.8 6.7 1 23 424 446 424 446 0.92 5 12 0.00087 0.11 13.8 1.4 1 23 451 473 451 473 0.97 6 12 0.00032 0.039 15.2 2.3 1 23 523 545 523 545 0.98 7 12 0.00046 0.058 14.7 1.5 2 23 553 574 553 574 0.98 8 12 1.1e-06 0.00014 22.9 2.1 1 23 585 607 585 607 0.96 9 12 0.00013 0.016 16.4 1.2 1 23 613 635 613 635 0.97 10 12 0.00017 0.022 16.0 0.7 1 23 641 663 641 663 0.98 11 12 5.2e-06 0.00065 20.8 2.0 1 23 669 691 669 691 0.96 12 12 9.3e-05 0.012 16.8 0.3 1 22 697 718 697 718 0.96
Sequence Information
- Coding Sequence
- ATGACGATGAATTCAAACTACTTTGGCTTGCCGCTTAATCTAGACAGAGCATGTCGAGTATGCCTTTCTGAAAGTACTAATTTGTCACCAATATTTTGCTCCGATCCAGAAGCGGCTGATTTTTCTGGACTTTATCAGAAAATACAAGTTTGCGGATCTATTGAAATCCAGGAACAGGATGGTCTGCCTTCATTAATCTGCGATGTCTGTATCTACAAGGCAACCGTTGCTCACGAATTCAGGCAGCAATGTCAACATTCTGATGCTCGATTGAGATTGTATTACAACAAACCAGCAAAGTCAAACGTCACGGATTCGAGCACACAAACTGATCCCCAAACTCGGATAATTTTGACAAAGAAAGTGTCGAGCCCTCAGGAGAATTATTTTGTTAAAGAAGAAATGCAGTCGGCAAGTACTCAGGAGTTTGCGAGTCCAACCGAGTCATTTTCACGGACAGAGTCCTGCgtggaagaaaataaagtaacTGATGAAACTATggaagaaaataagatttttataTGTAACATTGGGTTTGAAGGAAGCAAGGATGAGGAGAGAGTAGAGACATTAGAGGAGAGCACTCATCATTCTCCATTTCCACAAAGAGAATTGGCAGGGGCTGGGGATTTGGTAACCTTGGAAGAAAAGGAGGTGGAATCAGACGAGGGAAAACACGAAGAGCCAAAAAGCACCGATATGTTAGAAGAAGAATACCTCGTCGTTGGTTTGCTGAATGATAATACAGAGGAGGAAGATAAGCTTCCTACCAAACGGACCTATAGTAGAAAGGCGAAATCTGTGCCAGCGAAAAGTTACAGTGACGACGAAGTAAACGACAATTATTACGAACCGAGTAGCGACAGTCAAGACTCTGAcgtaatgaaattcaaatgtAAAGTTTGCTCGAAAAGATATGCGACCCAAAAAGGGTTGAAGAAACATTCCCTTGTTCATGACAAAAAACACAAATGCAATATCTGTTTTAAGATGTTTTACAAGCTTGAAAATATGGAGAAACATAAAAAGATTCATGCCTCTAAACCCCATGCTTGCCAATTGTGTCACGCGTCTTTTTCAAAACCGCAAAGTTTGGTACGCCATTTGAAATCTCATACGGAAAAAGTAAACGACATTATTAAACAGATTAACAGCGACGATCCAAACGAAGAAAAAGGCCACAAAAAAGATCTCAAAAACGACGATGATACGGATGACGAAATTGGAGCTATTAACGAACCAGATGAATTCGAAAACGCTCCGGAATTATATAAATGTCAAGAATGCAGCCAGTACTGTTCGTCGTTGAAGAATTTAAAGAGACATTGCTTAGTTCACGGAGACAAGAAATATTCTTGTACCGTTTGTAAGAAGTGGTTTTTCAGACCTGACACTTTGAAGAAACATGCTGAGAAGCACGGTCATGGTTTGCTGGATAATTTGGTTGAGGATAACAAGCTGTTCGATTCTGACGATGACTCATTCCCTAATCCGAGCGAAAATCTAGCGACAAGTAACAGTGACAGcgtgaaaaaagaaggaagcGACGAGGACGGCGGAGGGGAATACAAATGCCAACATTGTGATAAGATTATGGCGACAAAAAAGGGCCTCAGACGTCATGTATCGATGCATAAGCCAAAGGCTGAGCCAGCGACTTGTGAAATATGCAAAAAGGTTTGCGCCAGTCAAGCTAGACTTGCTCTACATCAGAAGACACATAAtaaaccaaaagaaaaagtCCCTCGTGAATATCTCTGCCATATTTGCAGCAAAGTATATCCAAGCAACTCGTCCCTAACTTATCACATGAGAACTCACACTGGGGTCAAGCCACATGTGTGTAAAATATGCAACAGCGGTTTCACCACAACAACAAGCTTGGCTAATCATCTTCGCATACATACAGGAGACAAGCCGTTTGTTTGCCACGTTTGTAGTGCAGCATTTGCCGTTAGCTCAGCTTTTAGACGCCACTTAACTCGGCATACTGGAGAGGCTAATTATCTATGCAAAACATGCGGTAAAGCCTTTAAGAGACTTAGCACATTGAAGGAACACACTTATACTCATTCAGGTGAAAAACCTTACGTCTGTAAGACTTGCGGGGCAGCTTACAGTCACAGTGGAAGTTTATTTGCACATCAAAAACGCTGTAGAGCCCAATATGGAGAGATTGGTCTGGTCGAGGAACATCATCATGCAGTTGCGCATCATATTCATGTGAATAATGTTCAATCTGCTGTTCGATCCCTCGCTGTAATTGGTCAGATGTTctaa
- Protein Sequence
- MTMNSNYFGLPLNLDRACRVCLSESTNLSPIFCSDPEAADFSGLYQKIQVCGSIEIQEQDGLPSLICDVCIYKATVAHEFRQQCQHSDARLRLYYNKPAKSNVTDSSTQTDPQTRIILTKKVSSPQENYFVKEEMQSASTQEFASPTESFSRTESCVEENKVTDETMEENKIFICNIGFEGSKDEERVETLEESTHHSPFPQRELAGAGDLVTLEEKEVESDEGKHEEPKSTDMLEEEYLVVGLLNDNTEEEDKLPTKRTYSRKAKSVPAKSYSDDEVNDNYYEPSSDSQDSDVMKFKCKVCSKRYATQKGLKKHSLVHDKKHKCNICFKMFYKLENMEKHKKIHASKPHACQLCHASFSKPQSLVRHLKSHTEKVNDIIKQINSDDPNEEKGHKKDLKNDDDTDDEIGAINEPDEFENAPELYKCQECSQYCSSLKNLKRHCLVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVEDNKLFDSDDDSFPNPSENLATSNSDSVKKEGSDEDGGGEYKCQHCDKIMATKKGLRRHVSMHKPKAEPATCEICKKVCASQARLALHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKICNSGFTTTTSLANHLRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEIGLVEEHHHAVAHHIHVNNVQSAVRSLAVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00718825;
- 90% Identity
- iTF_01413634;
- 80% Identity
- -