Tscr028122.1
Basic Information
- Insect
- Tenthredo scrophulariae
- Gene Symbol
- drl
- Assembly
- GCA_963978835.1
- Location
- OZ022236.1:12287060-12289968[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.066 8.2 7.9 2.2 2 19 288 305 287 309 0.77 2 18 0.0095 1.2 10.5 1.6 1 21 315 335 315 337 0.85 3 18 0.0033 0.41 12.0 1.8 1 23 350 372 350 372 0.93 4 18 0.0065 0.81 11.0 1.6 2 23 380 402 379 402 0.95 5 18 3.4e-05 0.0042 18.2 2.0 1 23 408 430 408 430 0.98 6 18 0.00024 0.03 15.6 2.3 1 23 436 458 436 458 0.97 7 18 8e-07 0.0001 23.3 4.0 1 23 464 486 464 486 0.99 8 18 0.078 9.7 7.6 0.0 2 21 498 517 497 518 0.91 9 18 0.67 83 4.7 6.0 1 20 540 559 540 562 0.94 10 18 0.0053 0.66 11.3 0.1 1 23 568 590 568 590 0.96 11 18 0.064 7.9 7.9 2.5 1 21 609 629 609 630 0.91 12 18 0.0048 0.59 11.5 0.1 2 20 638 656 637 658 0.93 13 18 0.081 10 7.6 0.7 3 23 667 687 666 687 0.98 14 18 2.5e-06 0.00032 21.8 6.9 1 23 697 719 697 719 0.98 15 18 0.0031 0.39 12.0 2.1 1 23 725 747 725 747 0.98 16 18 1.7e-05 0.0021 19.2 1.2 1 23 753 775 753 775 0.99 17 18 0.00073 0.091 14.0 0.4 1 23 781 803 781 803 0.98 18 18 7.6e-05 0.0095 17.1 2.5 1 23 809 832 809 832 0.98
Sequence Information
- Coding Sequence
- ATGCCTCGTGGCAAAATGGAAATAGAAACAGCGACAGAGTCTGATTCGCTATCGCTTATTGAAGACGTAGTGCAAATAGCACCAGATGGATATCATCTAGTTATGTTAGACCCTGAACTGGAGGAAGAATTATGCGAAGTAAATGGAGAGATAAGATCTGGGGAGCCTGAGACAATAACTGGAGACATAGAAAATACTGATGTAAACACAGaggatatttcaaatttttctgaaaCAGTATTTCGGCTGAATAACGATATAACTTACCCGTCGGTGTGCAGACTTTGCGCAACTAGAGGAAATGATATGGTTTATATGTTTGGGAGGAATAAAAAGGACAAAGATATTATCGCAATGATTGAACAGTGTCTAACTATAGTGGTGAAAAAGTCTGATAATCTACCAAAACAAGCCTGCCGTTCTTGCCTGGATAGACTAGAACTGTGTTATCAGTTTCATAAAACTGTAGCAGAAGCAGAAAAGCAGCTCCTCATATTaagggaaaaaataatccaCAATACTAAGAGGAAAGAGAAGTATTGTCAAGCCTTGAAGCTGTGTGATGGACAGCAAAGTTCAACAAGACTTGATGGTAATCAAGAAATTATTAAGACTATTATTACTGAAGAATTTCGTAACGTGGAGACAAGTGAAGAAGATGACATCGATCCATTGGATTTAGAAAGAATATCAAAATCTCAAGATTGTTCAGTGAAGGAATTGAAATCTGACAAAATAGTTTCGGAAGAAATTGTTGATAAAAAGTATGGGAACGATAGCACAGTTGGTAATATTCTCTTAAGTGAGAAGATAGTCAAGGATGAGACTTCTACTGGCCAGATAGTTGACCGCAAATTaataaaatgtcaaatttgTGGAAAATCTTTTCAGACTGCTAAGAAATGCTATATACATTCTAGCGTTCatgcttcaaaaaattactacccATGTAGTCTATGCGATAAAACATTTACAAATGAGAAAGACTGTAATGTACATAGTGCAGAACACAcagagagtaaaaaatatgaaagaagaGCTGCGACTCATGTCTGTAAGGAATGTGGCAAGAGATTTGTGACCGAAGCTAGactaaaatttcatcaaatctaCCATAATTCTGATACTAAACCTTGCTACTGTGAAAAATGCAATAAAATGATGGCTTCTGAGTCTTCTCTGTATCAGCATATGCTCAGTGTACACAAACAGTACAAAGAATACTGTTGCGACATTTGCGGAAATCAgtttagAGCTCAGTCCCAACTGTCTGCCCATCAAAGAAAACACAAAGACGAACGTCCGTTCGAATGCACCATTTGTAATAAAAGATTTTACTCAAATGATATACTAAGGCGTCACAAAAAGCTGCATCTTCCTGACAAACCTTATCAATGTGATCACTGTGGGAAACGATTCGACAGAAATAACACTTTGACTAAACATTTGTTGAAACATCAAATGGAAGCTGGTCGAACAATGATATGCCAAGTCTGCAATATTTGTAAAGAAGTATTTGCAAGTGCTGTAGCTGCGGAAATTCACCTAAAGGATTGTACGATGATTACAGAAGATAATAAGGATAATAAAACACTGAGATTAAACTTGAAGGAAACTTATCGATGCGAATACTGTGAAAGATGCTATACAGAAATTGAATATATGAAGAATCACAGGTCATGTCATAGCAAACCTTCCCCATACATATGTACAGTTTGTGACACAGCATACGCGACTTATAATCAAGTTACGGCGCATAAAATGGCGCATAAAAAGACCCCTAAAATTGCAACTGTTAAAGATGAACTAGTAATCCCTAGATATTTTACCTGCGAGTACTGTGATAGAAGCTTCCTTCATTTTACTAAGATGAATATTCACAGGCGGTCATGTTCCACCGGGAAAATTTGGACCTGTGGATACTGCAAAGCTGTATTTGAAAATGCTAGAGAACTTTCAAGGCATAAAAACGGAGAAGCTAATGACGAAACTTGGCTGTGTAATGAATGCAATAATAGCTTTGGGTCTGGATGCGCCCTCGAAATACACAGAGAGACTCATTCTGCTTTActaatggataaaaaaaacttctctTGCTCACATTGCAAAAAAACATTCAACCGGaAGGCACATCTCACTGTTCATCTACGGAGTCACACAGGGGAGAGACCTTACAGTTGTGACCTATGCGATAAGACTTATAAGATAAAAACTGAGAGAGATAATCACCGCAGAACTCATTCTGGTGAAAAACCATTCAAATGTTCAATATGTGAAAAGACGTTCGCCAATACAGCGAGACTCAGAGAACACACGAGATCTCATTCTGGGAAAAGGCCTTACCCCTGTTCCCTCTGTAATCAATCTTTCAAGAAAGCAAATGCGAGGAACGTTCACATGACTATACACACTGGGGAAAAACCGTACCAGTGTGACATATGTGGAATGCATTTCAGACTCACCGGTGATATGCGGAAACATAGGAGAACTCAACACGAACGGAAGAAATCAGCGACTAGAAATGATACAAGCTTTGAAATTGATTCTATAATATCTAATGcttcataa
- Protein Sequence
- MPRGKMEIETATESDSLSLIEDVVQIAPDGYHLVMLDPELEEELCEVNGEIRSGEPETITGDIENTDVNTEDISNFSETVFRLNNDITYPSVCRLCATRGNDMVYMFGRNKKDKDIIAMIEQCLTIVVKKSDNLPKQACRSCLDRLELCYQFHKTVAEAEKQLLILREKIIHNTKRKEKYCQALKLCDGQQSSTRLDGNQEIIKTIITEEFRNVETSEEDDIDPLDLERISKSQDCSVKELKSDKIVSEEIVDKKYGNDSTVGNILLSEKIVKDETSTGQIVDRKLIKCQICGKSFQTAKKCYIHSSVHASKNYYPCSLCDKTFTNEKDCNVHSAEHTESKKYERRAATHVCKECGKRFVTEARLKFHQIYHNSDTKPCYCEKCNKMMASESSLYQHMLSVHKQYKEYCCDICGNQFRAQSQLSAHQRKHKDERPFECTICNKRFYSNDILRRHKKLHLPDKPYQCDHCGKRFDRNNTLTKHLLKHQMEAGRTMICQVCNICKEVFASAVAAEIHLKDCTMITEDNKDNKTLRLNLKETYRCEYCERCYTEIEYMKNHRSCHSKPSPYICTVCDTAYATYNQVTAHKMAHKKTPKIATVKDELVIPRYFTCEYCDRSFLHFTKMNIHRRSCSTGKIWTCGYCKAVFENARELSRHKNGEANDETWLCNECNNSFGSGCALEIHRETHSALLMDKKNFSCSHCKKTFNRKAHLTVHLRSHTGERPYSCDLCDKTYKIKTERDNHRRTHSGEKPFKCSICEKTFANTARLREHTRSHSGKRPYPCSLCNQSFKKANARNVHMTIHTGEKPYQCDICGMHFRLTGDMRKHRRTQHERKKSATRNDTSFEIDSIISNAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01411751;
- 90% Identity
- -
- 80% Identity
- -