Tscr015819.1
Basic Information
- Insect
- Tenthredo scrophulariae
- Gene Symbol
- -
- Assembly
- GCA_963978835.1
- Location
- OZ022231.1:21903664-21906369[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00029 0.036 15.3 1.2 2 23 63 85 62 85 0.95 2 18 1.7e-05 0.0022 19.1 0.5 1 23 91 114 91 114 0.97 3 18 0.0093 1.2 10.6 0.3 2 23 122 144 121 144 0.93 4 18 0.0066 0.82 11.0 0.8 2 23 151 173 150 173 0.95 5 18 1.3 1.6e+02 3.8 2.9 2 23 178 199 177 200 0.93 6 18 0.0011 0.14 13.5 0.1 1 23 210 233 210 233 0.94 7 18 0.00026 0.032 15.4 6.2 2 23 240 262 239 262 0.93 8 18 3.5e-05 0.0044 18.2 2.4 1 23 268 290 268 290 0.96 9 18 6.4e-05 0.008 17.3 1.1 1 23 296 318 296 318 0.99 10 18 2.3e-05 0.0029 18.8 1.9 1 23 442 464 442 464 0.98 11 18 1.7e-05 0.0021 19.1 0.8 1 23 470 492 470 492 0.97 12 18 0.086 11 7.5 0.6 3 23 501 522 500 522 0.97 13 18 4.5e-07 5.6e-05 24.1 0.9 1 23 528 550 528 550 0.98 14 18 0.11 13 7.2 4.0 2 20 557 575 556 579 0.82 15 18 0.0055 0.69 11.3 4.6 1 17 586 602 586 608 0.87 16 18 9.5e-07 0.00012 23.1 1.2 1 23 612 634 612 634 0.99 17 18 0.027 3.4 9.1 1.1 1 23 640 662 640 662 0.94 18 18 1.3e-05 0.0017 19.5 0.7 1 23 668 690 668 690 0.98
Sequence Information
- Coding Sequence
- ATGGTTCAGCGAGGAGCACGGTCTAAGTGGGTTCCAGCGCCAAAGGTAGAAATGCACAGTGACTCGGAAGAGCTTATCAAATCGGTAGAGGGCAACGAGAGGCCAAAAAAGTATGAGAACGGTGTTGAAAAAGGGGCAAAGTCTCCTcccagaaaagaaaaacagtcTAAAGCCTCTGTCGAAACGAAATGCGAAGCCTGCCGGAAGACGTTTGCCAGTAAACGAAAGCTGACTGTTCATATTAAGTACGTACATTCGTCACTGCGACCTTTCACCTGTAAAATCTGCTCCCTCGCTTTCAAGATGAAAAACGCATTGAAGAAACACATCCAAGTGATACATGAGGGATCCTATGAGCTACTTCCGTGTAAAGTATGTGGCTACAAAGCCAAGGACAAGTCTAGACTCGAAGATCATTACGTAAGACGGCACACGGACATCTACGCAACTTCTTGCTACATTTGCGGGATGCAGTTGAGATTCAAACGCGATTTGACTACTCATATTAATCAGATGCACTGTGGCCCTGTGGTGTGCGAAAAGTGCGGCGATTTGCTTCCCAATTACAGATCTCTTTGCAACCATAAGAAAACTCATCACGCCGGCGGCGCCAGGAGAAACAGGAACTTCAAATGCGGCATTTGCTCCAAGGGATTTGCCTCCCAGGAATCCGCCGAAGCTCATAGAGTAAAACAGCATAATAACGGGGAAAGCTGCTACTGTGATCACTGCGGGAAACCGTTCAGCGGAAAATATGCCCTGACTCATCACATTCATAACGTTCACAGAGAAGACAGGCCCTACTTATGTCCGGTTTGCAACAAGACATTCAAGATGCACAGCCTGCTCCAGCTGCACCTCTTTACACACACGGATGTAAAACCGTACAGATGCGATATCTGCGGCTCTACTTATACTCAGAGGGGGTCTATGATGCTTCACAGACGGAAACACCCGGGAGAACTGCCACCCGTTCCTCCGATAAAGCTAGATTTTTTGCTGAAGAGCATTCAGCCTAAGATAAACGAACTTACCAAGACAAAGTACAATCCACTTGACCCTCTCGGCCCATCTTTTTTGACAGTCAAGCTAGGCGAAGACTATTTTCTTATTCCACAATCTCTGAGCGTTTTTATGATGAAAGAGCCCAACCCCGGAGCAGAAGCTGGGTCAAAGGCCGACGTAAAGAGCGAAGGAGCTCGAGTAAAacccgccgccgccgccgccgatgacgacgacgacctGGACAATACGCCGTTGGACTTCAGGAGAAGATCGAGCAATAATAAGGTCAAGACTAAGAGATCGAGATTGAAGAAATCCTACAGCTGCGAAATTTGCTATGCATCTTTTGACAGAAAGAGCAAACTCACGAGCCACATGTTTAAACACAGTGATTCGAGACCCCACAAGTGCGCCGTGTGCTCAAAGGGATTTAAGACGAGCGGCTACCTCGCCAGACACCTGGAGATACACGACGAACCCTCGCAGGAGCACGGCTGTACCTTGTGTGACTTCAAAGCGCGCACCAAGCCCTATCTCAAGATACATTACATCAGGAAGCACACGCAAGATTACAACTACAGCTGCGAAGAGTGCGGCAAAATGTTCAAGGTTCAATCCGACTATACCACCCACATGAAGGATCACGACACCGAGTCTTGCTGCGTGTGTGATATATGCGGCACCTCTTATCCCAGCAAGAGTTCTTTGTACTTTCACAAACACTATAAACACAAGACAAAAGTTAAGGAATTCGAGTGCCCGACTTGTCACAAGCGATTCAAGAGCCAGAAGAATCTAGACTGCCATTCTGAGCTCCACAAGGTGAAATATGTGTGCGAACAGTGCGGAATGGAGTTTAAATTCAAATACGGTTTGACCAAACATCTCAGAACTCATTCGGGGGAGAAATCATATCTCTGTGCTATCTGCGGAAAGACTTTCGGCTGCCTTAGCTCACAGAAAATTCACCTGCTTACCCATGTCGGAGAAAGACCCTATGTCTGTGATCTGTGCGGTCAGAGCTTCACCCAGCGGTCACCTATGATGCTGCATCGAAGGAAACACCCCGGCGTTCATCCAGCTCCACCACCCATCAAAATAACAAACTTACTACACGGAGTTCAAGACAAGATTATAGTGAACAAGAGCAGCAATTAA
- Protein Sequence
- MVQRGARSKWVPAPKVEMHSDSEELIKSVEGNERPKKYENGVEKGAKSPPRKEKQSKASVETKCEACRKTFASKRKLTVHIKYVHSSLRPFTCKICSLAFKMKNALKKHIQVIHEGSYELLPCKVCGYKAKDKSRLEDHYVRRHTDIYATSCYICGMQLRFKRDLTTHINQMHCGPVVCEKCGDLLPNYRSLCNHKKTHHAGGARRNRNFKCGICSKGFASQESAEAHRVKQHNNGESCYCDHCGKPFSGKYALTHHIHNVHREDRPYLCPVCNKTFKMHSLLQLHLFTHTDVKPYRCDICGSTYTQRGSMMLHRRKHPGELPPVPPIKLDFLLKSIQPKINELTKTKYNPLDPLGPSFLTVKLGEDYFLIPQSLSVFMMKEPNPGAEAGSKADVKSEGARVKPAAAAADDDDDLDNTPLDFRRRSSNNKVKTKRSRLKKSYSCEICYASFDRKSKLTSHMFKHSDSRPHKCAVCSKGFKTSGYLARHLEIHDEPSQEHGCTLCDFKARTKPYLKIHYIRKHTQDYNYSCEECGKMFKVQSDYTTHMKDHDTESCCVCDICGTSYPSKSSLYFHKHYKHKTKVKEFECPTCHKRFKSQKNLDCHSELHKVKYVCEQCGMEFKFKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDLCGQSFTQRSPMMLHRRKHPGVHPAPPPIKITNLLHGVQDKIIVNKSSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -