Tscr008199.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tenthredo scrophulariae
Gene Symbol
-
Assembly
GCA_963978835.1
Location
OZ022229.1:8500116-8505342[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.0039 0.48 11.8 2.5 1 20 31 50 31 52 0.94
2 26 0.2 24 6.4 0.9 1 23 108 131 108 131 0.93
3 26 0.00013 0.016 16.4 1.1 1 23 164 186 164 186 0.98
4 26 3e-05 0.0037 18.4 1.4 1 23 192 215 192 215 0.97
5 26 3.2e-06 0.00039 21.5 0.4 1 23 221 243 221 243 0.98
6 26 1.3e-06 0.00016 22.7 1.8 1 23 249 271 249 271 0.97
7 26 2.9e-05 0.0035 18.5 0.4 1 23 277 299 277 299 0.98
8 26 0.00037 0.045 15.0 4.0 1 23 305 327 305 327 0.96
9 26 0.00023 0.029 15.6 0.9 3 23 335 356 334 356 0.96
10 26 0.00048 0.06 14.6 0.0 2 23 396 418 395 418 0.96
11 26 5.8 7.2e+02 1.8 0.9 1 11 423 433 423 446 0.89
12 26 0.0045 0.55 11.6 0.9 3 23 462 482 461 482 0.98
13 26 2.2e-05 0.0027 18.8 2.0 1 23 497 519 497 519 0.96
14 26 0.00017 0.021 16.0 0.6 1 23 547 569 547 569 0.99
15 26 0.0034 0.42 11.9 2.4 2 23 576 598 575 598 0.94
16 26 0.014 1.8 10.0 0.2 1 23 754 777 754 777 0.94
17 26 0.0044 0.55 11.6 0.1 2 23 780 802 779 802 0.94
18 26 3e-07 3.7e-05 24.7 1.3 2 23 809 830 808 830 0.96
19 26 7.3e-05 0.0091 17.2 1.0 1 23 836 859 836 859 0.95
20 26 0.00024 0.029 15.6 0.7 1 23 1010 1032 1010 1032 0.97
21 26 0.00087 0.11 13.8 3.7 1 23 1038 1061 1038 1061 0.96
22 26 0.00017 0.021 16.0 0.4 1 23 1067 1089 1067 1089 0.97
23 26 0.00015 0.018 16.2 3.5 1 23 1095 1117 1095 1117 0.97
24 26 0.037 4.7 8.6 1.2 1 23 1123 1145 1123 1145 0.86
25 26 8.7e-06 0.0011 20.1 1.2 1 23 1151 1173 1151 1173 0.97
26 26 4.4e-05 0.0055 17.9 2.0 1 23 1179 1202 1179 1202 0.97

Sequence Information

Coding Sequence
ATGAGTAGTAGGCGAAAGttttcaaaacaaaaatttcatcccacTGCAGGAGAGTCCATTCAATATCAATCTCAAAATACGAAATCGTCCTATTCCTGCCTCAACTGCCAACGAATATTTAAAAGAGAATTCCATTTCAAACGCCACGTCATAAAATGCGAGAAGAAACATTCAGAATCTGAATTAGTTACTGAAAATTCGTCAACCGGAGTGGGAGAGTTTACGGAAAGATCAGAAGATGCCATCAAAGAGGtgaaatcaaagaaattgGAAAACGATTGGGATTTAGGTGAAAAGAGGAGAATAAATAAGCTCAAGTCTTATCCTTGTATGCACTGCAATTACTCGGCGAATAAGAAGCGGTTACTTGACGCCCATTATTCGGAAGTTCATCAAGAAGTTTCGCGaaaaaaacagataaaaaAGTCAAGAAGTATAGATAAAGAGACAATAAAACGAGCACGCGTAGAAGCTGATGGCAAGGTTTACTACCACTGTAACGATTGTGGGAAGGATCTCTATTCTCCTTATACCTTTTCATGGCATATTAGAATTCATACGGGGGAGAGACCTTACACCTGCCATCTGTGCGGCCGTCAATTCCGGGTTAATCAAGGCTTGGCAAGACATTTGCGGGAAACTCATGCAGgcattaaaaaatttccatgCGATATATGTGGAAGAATGTTTTCAACTAAACGCAACGCTCAGGATCATCGACGTATTCATACAGGAGAGAGACCCTTCGCATGTAAAACATGCGGAAAATCATTCAAACAAAAGGCATCATTGTTTGTTCACAACCGTACTCACACAGACTTCTTTCCATTCAAATGCAACTACTGTGGTCAAGGCTTTCGCACCAGACCTCCGCTCATGGTTCACATAACTAAACATACCGGTGAAAAACCCCATGCCTGTGATATTTGTAATCGTCATTTTCGCATTAAGTATGAACTGAAACGACATCGGCTTGTACATTTTGAGGAAAAACCTTGGCTTTGTACTGACTGTGGACTTTCGTTTAGACAAAAGCGTTATTTAGTTAATCATAACAAAATAAATCACAGCACTAATCATAACGTAACTTTGCAGTTGCATGGAGAGGAATATACCGTGAGCGTGTTACAAATACCTAAAGCAGAAATTGAAGAATCTTCTTACGAAGAAAGACTAGAATACGTCGAGTGCGGGGAATGTGAGGCAAcgttcattcaattttcagatCTTGCTGTTCACatgaattccgaacacaatGATTTTGTGCATTATTGTACTTATTGCAAAACCGTATACCGAGGAGATATTAAAGACTTCACAGAACATGAGAAAGGGCATGCAACCGTTAATCAGTCAGGCAAGAAAGCCTCAGGAAACGTATTTTGCTCTTTGTGCAACGAAGAATTTAACTCTATCACGAAGCTCAAGCAACACTTGATTACACATGTCAATGGAAGACGGATTTTGAAGAAAACTGAACCCAAATCTTATACCTGTGATAAATGTGAGAGAATTTTTGCCAGGAAGTACGACCTGAGACGACACGTACATGCGCACGAAGATTTTGGATACATAGAAAACAGGGAAGAGATGGAGATTTTAAACACCGCTAAGGTCATTATAGACGACCGTTGTTTCTACAAGTGCAGCACCTGTGGGAAGGATATCGTAACAAGACGAGGATTTTTACGTCACATTAGGATTCACACTGGACACAAACCCTGCAGATGCCATATCTGTGGCAACCAATATCGGATAAAACAAGACTTGGCAAGACACATCAGAGACGTACATGAACGTATAAAAAGGTGTTCGCTGGAGGGAGAGGATATCAAGGCGTCTATTTTCGATACCATTGACGAAAGTGGTGGTCGGGATGAACAATTTACGTATGGGGATACCATAGATGTTACAGTAATGTATTCTAAAGAGCGAGATGGTATAGAAATCGAAGAAGATTCGGTTGTTCTGATGATACCACAGAGTAAACCAGACAATCCTGATGCACGTGCTTACGGATGTCGTACTTGCGATATTTATAATTTGATGTTTACCGAGTTTTCCGCGCATGTAAGCAAGCATTCATCAGACAATGGGGATTACAGCGAAGAATATGAAAGCCAGGAAGCGTTGCATGCTGCAGTTGCTCATTCCCTTCAATCCACTATGGACAATTTTAATTGTGAAACTCGCGATAGCAAATTCAATACCGAGACAGTATTGTTAGAGCATCTGGAAATTCACACCCAAGAAGAAACTTACAAGTGTGAATTTTGCGGTATCGATTTTGACGCTTTAACAAGTCTTCAGTCTCACGTTTCTCTTCAACACTCTATCCCTTGTCAAGATTGTGACTTACGATTTGATACAGACCAGCTCCTTCAAGATCATATTAAAGACGCTCACTTGGATAAGGTATTGATATCATGCGAAACATGCGGGAAAGTGTTTCCCAATAAATCTAGCCTTCGACATCACATGATTAGGCACAGCACCGATCAGCCATACGTTTGTAAAACTTGTAATCGGGCATTCAAACGCACATCTAGTTTGTACATGCATGAGAGAGCCGTCCATCAGAAGATCAAAGCATTTTTGTTGACGAATTATATTCGTTCTCCTCGATCGTCGTCCTTCACTGAATTTCGGAGAGCTTATCAAGCTCTGCTACAGTCCTACAAAAGGCAATTCGCGCCTATTTATCAATCCGTTTTGAGGCACAAAAAGAGTGATCAGTGGCTAGATATCGGTTCTTTGAACAGTGGCACTGATCCAAGCAGCCCTGTAGATATAAATGGCAAAACATTGcaattagaagaagaagatttaGCCCCGACAATTGTTTTACGTAAAAAATTGACCCCTATTTCAAACGATGGAAATGAATCGCTAGATCCGCTCAATACTTCGGTGCTCGGCGTGGCAATTCACGCAAGTCAATCACCAGATGAAAATTTCGGAGAAGAAAACTCGAAAGATGATCAAGATTCCGTTGCAGAACTTCCATCAGTTTCTACGAAAATTTCTTACGATTGCAAATTGTGTAGTAAAAAGTTCCCATTGCAGGAGAGTTATCGTGCTCATATGAGTATACACACTGATGCTAAACGGTTTACTTGTCATATTTGTGGTAAGCAGTTTGGACAGACTGGTAGCTTATACTATCATTTAAAACACGTTCATGGCGGGGTTAAACAACATTCTTGCGATCTTTGCGGTAGAAGTTTTGCGATGAAAGCAGCCATGGAAGATCATAGACGAATTCATACTGGTGAACGACCATATTGTTGCGCATCTTGTGGAAAAACATTTAAGACAAAAGCTTCGTTGTATATTCACAGTAAAACTCACACCGACGAGCTACCTCACAAATGTTCTTATTGTCCGAAAGCCTTTCGCTGGAGGCAGCAAATGTTAGGGCATTTGACCATTCACACTGGACAAAAGAATCACATTTGTGAAATTTGCGGTAAACGTTTTGGTGTCAAAAATGACTTAACAAGGCACAAACGGATTCATTCGGAAGAAAAACCATTCATGTGCCAACAGTGTGGTCTCAGTTTTGGTCAGAaacgatatttgaaaaatcacgAAAGAACTAGGCACAGATAA
Protein Sequence
MSSRRKFSKQKFHPTAGESIQYQSQNTKSSYSCLNCQRIFKREFHFKRHVIKCEKKHSESELVTENSSTGVGEFTERSEDAIKEVKSKKLENDWDLGEKRRINKLKSYPCMHCNYSANKKRLLDAHYSEVHQEVSRKKQIKKSRSIDKETIKRARVEADGKVYYHCNDCGKDLYSPYTFSWHIRIHTGERPYTCHLCGRQFRVNQGLARHLRETHAGIKKFPCDICGRMFSTKRNAQDHRRIHTGERPFACKTCGKSFKQKASLFVHNRTHTDFFPFKCNYCGQGFRTRPPLMVHITKHTGEKPHACDICNRHFRIKYELKRHRLVHFEEKPWLCTDCGLSFRQKRYLVNHNKINHSTNHNVTLQLHGEEYTVSVLQIPKAEIEESSYEERLEYVECGECEATFIQFSDLAVHMNSEHNDFVHYCTYCKTVYRGDIKDFTEHEKGHATVNQSGKKASGNVFCSLCNEEFNSITKLKQHLITHVNGRRILKKTEPKSYTCDKCERIFARKYDLRRHVHAHEDFGYIENREEMEILNTAKVIIDDRCFYKCSTCGKDIVTRRGFLRHIRIHTGHKPCRCHICGNQYRIKQDLARHIRDVHERIKRCSLEGEDIKASIFDTIDESGGRDEQFTYGDTIDVTVMYSKERDGIEIEEDSVVLMIPQSKPDNPDARAYGCRTCDIYNLMFTEFSAHVSKHSSDNGDYSEEYESQEALHAAVAHSLQSTMDNFNCETRDSKFNTETVLLEHLEIHTQEETYKCEFCGIDFDALTSLQSHVSLQHSIPCQDCDLRFDTDQLLQDHIKDAHLDKVLISCETCGKVFPNKSSLRHHMIRHSTDQPYVCKTCNRAFKRTSSLYMHERAVHQKIKAFLLTNYIRSPRSSSFTEFRRAYQALLQSYKRQFAPIYQSVLRHKKSDQWLDIGSLNSGTDPSSPVDINGKTLQLEEEDLAPTIVLRKKLTPISNDGNESLDPLNTSVLGVAIHASQSPDENFGEENSKDDQDSVAELPSVSTKISYDCKLCSKKFPLQESYRAHMSIHTDAKRFTCHICGKQFGQTGSLYYHLKHVHGGVKQHSCDLCGRSFAMKAAMEDHRRIHTGERPYCCASCGKTFKTKASLYIHSKTHTDELPHKCSYCPKAFRWRQQMLGHLTIHTGQKNHICEICGKRFGVKNDLTRHKRIHSEEKPFMCQQCGLSFGQKRYLKNHERTRHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01411730;
90% Identity
-
80% Identity
-