Tscr015828.1
Basic Information
- Insect
- Tenthredo scrophulariae
- Gene Symbol
- -
- Assembly
- GCA_963978835.1
- Location
- OZ022231.1:21921600-21927786[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.64 80 4.8 0.0 1 23 104 126 104 126 0.94 2 31 3.1e-06 0.00039 21.5 2.0 1 23 132 154 132 154 0.97 3 31 0.0098 1.2 10.5 3.8 2 23 161 182 161 183 0.94 4 31 6.9e-05 0.0086 17.2 1.1 1 23 188 210 188 210 0.98 5 31 0.00051 0.063 14.5 0.8 1 23 216 238 216 238 0.97 6 31 0.00019 0.024 15.9 5.4 1 23 249 271 249 271 0.97 7 31 2.3e-06 0.00029 21.9 1.1 1 23 280 302 280 302 0.98 8 31 3.4e-05 0.0043 18.2 1.7 1 23 308 330 308 330 0.98 9 31 6.6e-06 0.00082 20.5 3.9 1 23 336 358 336 358 0.97 10 31 7.8e-07 9.7e-05 23.4 2.5 1 23 364 386 364 386 0.98 11 31 0.00013 0.017 16.3 0.3 2 23 462 483 461 483 0.97 12 31 0.0013 0.16 13.2 1.4 1 20 495 514 495 516 0.88 13 31 0.0015 0.19 13.0 2.5 2 23 523 545 521 545 0.93 14 31 0.044 5.5 8.4 0.8 1 23 552 574 552 574 0.98 15 31 0.00018 0.022 15.9 3.8 1 23 580 602 580 602 0.98 16 31 0.0048 0.6 11.4 0.1 2 23 609 630 608 630 0.96 17 31 0.25 31 6.1 0.3 1 23 636 658 636 658 0.94 18 31 0.014 1.8 10.0 0.1 1 23 667 689 667 689 0.98 19 31 0.00016 0.02 16.1 0.4 3 23 696 716 694 716 0.97 20 31 0.00017 0.021 16.1 2.4 1 23 722 744 722 744 0.97 21 31 0.00037 0.045 15.0 1.4 2 23 779 800 778 800 0.96 22 31 0.11 14 7.1 0.4 1 23 815 837 815 837 0.98 23 31 0.33 41 5.7 4.8 1 23 843 866 843 866 0.91 24 31 3.7e-05 0.0047 18.1 4.1 1 23 872 894 872 894 0.97 25 31 0.031 3.8 8.9 2.8 1 23 898 920 898 920 0.98 26 31 0.00025 0.031 15.5 3.8 3 23 928 948 926 948 0.96 27 31 0.0029 0.36 12.1 2.5 1 23 954 976 954 976 0.96 28 31 0.0036 0.45 11.8 0.7 1 23 983 1005 983 1005 0.97 29 31 9.1e-07 0.00011 23.2 0.4 1 23 1010 1032 1010 1032 0.98 30 31 4.2e-06 0.00052 21.1 1.1 3 23 1040 1060 1038 1060 0.96 31 31 1.2e-06 0.00015 22.8 0.8 1 23 1066 1088 1066 1088 0.98
Sequence Information
- Coding Sequence
- ATGAAGATAGATTTCCTTCCTCCACCTGGGTTTCCCTCGGCTCTACTGAGTCTGCAGGGTCGGAGCAGGAGGAGAATAATAGAGGTGGATTTAAAGCCTCCATCATCTAAAGTCTGGAGGTTTGAAATTGGGAACGGTAGGAAAGCCATAGCATATTTTATAACAAAGAGCAGCGACGTCGGTTTGGCTGTTAGCACGGTCGAGATGTCTCAGGACTGTAGGGGTACAGAGATAGAAATGGAGGATCAAAAGATATCTATGAATGAACAGAGTTTGCAAATCGATGACAACAACGACGCCGCTAGGCTATACCTCTGCAATTTGTGCGGCGACGGTTTCGCCTCCGAACAGGCGCTAGCGGGTCATGTCGAGGTCCACGACGATAAGTATCCTTACGCGTGCGATCACTGTGGAAGAAGTTTTAAGACCACCTCAGTGCTGAGGAAACATCAACTGATTCACACTGGGGAGAAAACAAACGTTTGCGAAACTTGTGGATACTCTAGTCTCCACCGTTCTAATCTTGTTAATCACCAACGGCGTCATCACTTTGACTACAAGTATCGTTGCGATGTTTGCAGCATGGGATTTTACACCAAGAGTAATTATCAGGAACACCAGACTATTCACAGTAGGGAGAAACCGTTTCAATGTCAGATATGCCAGGCCTCGTTTAGGTACCGTCAGGGGTTGAGGCTTCATGCCAAACTTCATCAGCCGGACTATGTTCCACCCCAAAAAAAACATCACTGCGAATTGTGCAACAAAAGATTCTCACGAAAACAGGTATTGCTCGTTCACATGAAGACCCATAGCACCGGCGTTGTTCAGAGCGAATTTGTATGCCATATATGCGGCAAGGCTGTATCGAGCAAGACTTACCTTACGGTTCACGTGAGGAAACACACGGGCGAGAAACCCCACGTTTGCGATTTGTGCAACAAAGGTTTCATATCACAGAATTATCTGAGCGTACATAGGCGGACTCACACCGGCGAAAGACCGCACGAGTGTACCCATTGCGGCAAAAGATTCACACAAAGAACAACGCTGGTTGTTCATCTCAGAGGTCATACGGGGGATCGTCCATATCCTTGTAACATTTGCCACAAGTCTTTTGCTTCAAAAACAATGCTCAATTCACACCTTAAAACACACGCTAAACAGAACGCTCGCGCCCAGCAAGAACAGCAGAGAAACGACGAGTACGGCACTGAGGAGGCATCCCTTCAGACCGTCGTGAAAGAAAACCAATCCTCCTCTTCCTTTCCTATGAGCAACAGGACTAATTCTCGAGAGACTGGAACTGGATCAAGCCCGGAGCCATCTGCCCCCTGCCGTTCTTACCTCCCTCACGATTTTAGCTTAGAATCGTTGGATACCCGTTGCGATATTTGTGGAAAGATTTTTATAGACCAGCTCTATCTGGATAGGCATAAAATGTCACACGATAATAAGCCCCAGAGAAAATCTCTTCTCTTATACCAGTGCAAGGACTGTGACAGAGTTTTTAAAACTAGAGAAGACTGCCTTTCCCATCTTCTTAGCGATAAAGGACATACTTGTACCTGTAGCCATTGTGGAAAGGTGTTTAAGACAGCTGCAGCCCGTGACATACATGTTAAGAAGGAACACTGCAATACTAGAGTGAAATTTAGCTGCGGGGAATGTAACTTCGAGACTCCAGACACTTTTTCTTATCGGGCACATCGTAAAATGCATAATGACAATAGAACTTACCGCTGTGAATACTGTGACTTCAAAACTAAAAACAGTAAGAGCCTTCAAACGCACAGAAGGCTGCATACAAACGATTACAGTATACGCTGTGACGTTTGTTCAAAGGGTTTTGTCTCCCAGGCAGTATTAGATAGACATAAGATATCTCACACTGGTGAGAGACCGTTCGCTTGCAAAGTTTGCTCCGCTTTGTATGCAGACCGACGTAGCTTGCAGCTTCATTCTACATCACACGATCCCAAGGGACGCGAGAAGAAATATCAGTGTGAGATCTGTGGGTATTCTAGTTTTTGGAAAGGGGCTGTTAGAGTTCATATGAAAATTCACACTGGGGCCAAAGTGATTTGCCATATTTGTGGGCAACCTGTTAGCAGCAATCATTATCTTGGTATTCACATGCGAATTCACACTGGGGAAAAACCCTACAATTGTGAAATATGCAGCAAAGGATTCAGACAACtgaaaaatttaatcgtaCATTGCCGTACTCATACTGGGGAAAAACCTCACCTATGTGACAAATGCTCCAAAGACGACGCTACGCCCGAGCAGAGCCGTCTTTTGAAGGCGGATAGGGACGAGGTTTTGCAATTAATTTGTGACTTTtgtgacaaaaaatttctaaacaaATCCTCTCTGGCTACTCACAGGCGAAGTCACAAGCCAAACTACTCTCCTGAGAATTCTAACGAGCCGAGTTTATACAAGTGCGATTTTTGTGGGATTAAAATACGCCTGAAAGACGTGTTCGCAGAACACAGGAGACTTCACACTGGCAATAAAACATACCATTGCGAATATTGCAACCTGTCTTTTGCCACACATCAGAGACTTTATTATCACAAAGTGAGAGAGCATGTCAAAGACAAACCATTCTGCTGCAAGATATGCCCGAAGAAATTCAAGCTGAAACAATATTTGAACGTTCACATGAAGATACACAACAAAGTATACGTCTGTGACGTCTGTGGGCTTTCCAAGGCAACCTTGTGCAACTTGGAGCACCACAGGAAGCGGCACAACAAGGAGTACCTTCTATTTTGTCACCTTTGCTCTAGGGGGTTCTACAACAAGTCCAGCCTTCGACAACATCTCACTACCCACTCTGGCGAGAAACCGTTCAAATGTGGAGTTTGCCAATCTTGTTTCACCACGAGAGGATATCTTAAGCTCCACGCCTCGCTGCACGAGAAGGTGGAGAAGAAACACAACTGTGATATATGCGATTTTCGTACCTCTTGGAAAGGGGCGTTGAAGGTTCACATGAGAATTCATTCCGGTGAAAGTTACGCTTGTAATGTTTGTGGCAAGTCAGTTTCCAGCAAGACTTACCTCCGTACTCACATCAGGATACATACAGGGGAAAAACCTCACCTCTGCAACGTCTGTGGGAAGGCTTTCAGCGCCTCTAAATATCTAAGAATTCACATAAGAACTCATACCGGAGATAGACCCTATCCATGTACAATGTGCGAGAAACGTTACTCCCAGAAAGGCAGCCTCACTGCTCACCTCAAAACGCACGAACCGAGGAGATCCCAAACCTCGTAA
- Protein Sequence
- MKIDFLPPPGFPSALLSLQGRSRRRIIEVDLKPPSSKVWRFEIGNGRKAIAYFITKSSDVGLAVSTVEMSQDCRGTEIEMEDQKISMNEQSLQIDDNNDAARLYLCNLCGDGFASEQALAGHVEVHDDKYPYACDHCGRSFKTTSVLRKHQLIHTGEKTNVCETCGYSSLHRSNLVNHQRRHHFDYKYRCDVCSMGFYTKSNYQEHQTIHSREKPFQCQICQASFRYRQGLRLHAKLHQPDYVPPQKKHHCELCNKRFSRKQVLLVHMKTHSTGVVQSEFVCHICGKAVSSKTYLTVHVRKHTGEKPHVCDLCNKGFISQNYLSVHRRTHTGERPHECTHCGKRFTQRTTLVVHLRGHTGDRPYPCNICHKSFASKTMLNSHLKTHAKQNARAQQEQQRNDEYGTEEASLQTVVKENQSSSSFPMSNRTNSRETGTGSSPEPSAPCRSYLPHDFSLESLDTRCDICGKIFIDQLYLDRHKMSHDNKPQRKSLLLYQCKDCDRVFKTREDCLSHLLSDKGHTCTCSHCGKVFKTAAARDIHVKKEHCNTRVKFSCGECNFETPDTFSYRAHRKMHNDNRTYRCEYCDFKTKNSKSLQTHRRLHTNDYSIRCDVCSKGFVSQAVLDRHKISHTGERPFACKVCSALYADRRSLQLHSTSHDPKGREKKYQCEICGYSSFWKGAVRVHMKIHTGAKVICHICGQPVSSNHYLGIHMRIHTGEKPYNCEICSKGFRQLKNLIVHCRTHTGEKPHLCDKCSKDDATPEQSRLLKADRDEVLQLICDFCDKKFLNKSSLATHRRSHKPNYSPENSNEPSLYKCDFCGIKIRLKDVFAEHRRLHTGNKTYHCEYCNLSFATHQRLYYHKVREHVKDKPFCCKICPKKFKLKQYLNVHMKIHNKVYVCDVCGLSKATLCNLEHHRKRHNKEYLLFCHLCSRGFYNKSSLRQHLTTHSGEKPFKCGVCQSCFTTRGYLKLHASLHEKVEKKHNCDICDFRTSWKGALKVHMRIHSGESYACNVCGKSVSSKTYLRTHIRIHTGEKPHLCNVCGKAFSASKYLRIHIRTHTGDRPYPCTMCEKRYSQKGSLTAHLKTHEPRRSQTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -