Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0087 16 6.4 0.4 18 30 63 75 60 84 0.85

2 8 4.1e-08 7.6e-05 23.4 1.5 12 43 112 140 107 141 0.89

3 8 0.16 3e+02 2.3 3.8 18 41 148 168 144 170 0.80

4 8 0.019 35 5.3 3.3 14 41 199 223 187 225 0.79

5 8 0.23 4.2e+02 1.9 0.5 15 26 228 239 225 246 0.80

6 8 0.39 7.2e+02 1.1 1.9 5 30 247 272 243 281 0.71

7 8 0.053 98 3.9 5.6 15 39 284 305 271 309 0.78

8 8 0.0052 9.7 7.1 0.5 19 44 318 340 316 340 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0087	16	6.4	0.4	18	30	63	75	60	84	0.85
2	8	4.1e-08	7.6e-05	23.4	1.5	12	43	112	140	107	141	0.89
3	8	0.16	3e+02	2.3	3.8	18	41	148	168	144	170	0.80
4	8	0.019	35	5.3	3.3	14	41	199	223	187	225	0.79
5	8	0.23	4.2e+02	1.9	0.5	15	26	228	239	225	246	0.80
6	8	0.39	7.2e+02	1.1	1.9	5	30	247	272	243	281	0.71
7	8	0.053	98	3.9	5.6	15	39	284	305	271	309	0.78
8	8	0.0052	9.7	7.1	0.5	19	44	318	340	316	340	0.91

Coding Sequence: atgaatatagaAAGCTGCGAGGATCAGATATCAGGAAATTCCATGATTAGAATAGAGGTGACTCCGGACTTTCCTTGTAATCTTGAAACGGAAAGTGAACCAAGGTCAAATGTTAGTGACTTTGtttttgaaagaagaaaaaagaatgattTAGAAATAGGCGAAAATGATTTGGGTGAATTGTATCGTTGTACTCATTGCGAGAAGGAGTATAGAACTAAAAGAAGCATTGTTAGACACTTTAAGTTGAACAATTGCACGGGGGAATCGAAGCGAGATAAAGAAAGTGGCAATGTGATGGAAGCTAAGAAACGGGGACCGAAAATAGTTAGACTAGCTGATAATAGGTACCAGTGTAGACATTGCAACAAGACTTACACTCagaagaataatttatttcgcCATATGCGAGAGGATCATGTCAAGCTCGCTAAACCAACTCGTTGCAATGTTTGTGGTAAAGAATTTTACAACTATCGAAAGTTGCATCAACATCTTAGATGCCACTCTGAAAAACCTTACGAATGTTCAATTTGCTGTAAAAGATTTTCTCAAGTAGCTCATGTTCAGAGTCACATGTTTACTCATACGGGTGAAAAACCTCACCAATGCCACATCTGCGAAAAACGTTTCAGCAAGtctttcaatttgaaaattcatatcgTTAGGCACAATGGTGAAAAACAATTTAAATGCCGTATCTGCCAAACTGAGTTCTTCACGCATGGCGAACTTGAAAAACATGTCAGGATTCATACGGCAGAAAGACCTTACTCGTGCGATACTTGCGGCAAACGTTTTAAACAGAATGGTCATCTGAAGAAACATCTTTTAAGTCATACTGGCCAAAAACCTTACAAATGCACAATGTGTAAGAAAGATTATGTTAATTCCAGTCATCTTAAAAGACACATTCTTACTCATACTGGAGAAAAATTGCCAGAACATCTTTGCCCAATTTGTGGTAATAATTTCTCACAACCAAGTACTGTGAAAAGGCATATTGAAAAAGTACACAGGAAATTTTCGCACGTGTAA
Protein Sequence: MNIESCEDQISGNSMIRIEVTPDFPCNLETESEPRSNVSDFVFERRKKNDLEIGENDLGELYRCTHCEKEYRTKRSIVRHFKLNNCTGESKRDKESGNVMEAKKRGPKIVRLADNRYQCRHCNKTYTQKNNLFRHMREDHVKLAKPTRCNVCGKEFYNYRKLHQHLRCHSEKPYECSICCKRFSQVAHVQSHMFTHTGEKPHQCHICEKRFSKSFNLKIHIVRHNGEKQFKCRICQTEFFTHGELEKHVRIHTAERPYSCDTCGKRFKQNGHLKKHLLSHTGQKPYKCTMCKKDYVNSSHLKRHILTHTGEKLPEHLCPICGNNFSQPSTVKRHIEKVHRKFSHV

Sequence clustering based on sequence similarity using MMseqs2