Tscr002365.1
Basic Information
- Insect
- Tenthredo scrophulariae
- Gene Symbol
- -
- Assembly
- GCA_963978835.1
- Location
- OZ022227.1:27582189-27582776[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-07 0.00013 22.4 0.0 8 39 21 52 18 56 0.90 2 2 8.3 9e+03 -2.7 0.1 16 22 151 157 145 157 0.57
Sequence Information
- Coding Sequence
- ATGAGGAACTATAAAAGAAAGTCCGAGAGAGCCTCAAAAAGTGAAGATGTGTACGGGTTGGCTGCAAaagaaattttagaaaaaggCACTACGGTTCGAAAAGCAGCTCAGTTATTCGATATTTGCCATGTCTCTTTGCAcagatttatgaaaaaaaagaaaaacaatgaGCCTCTTTCTGTCGGATATGGAAAACCGCGATTAGTATTTGCACCTGCAGAAGAAGAACAAATAGCTTCGTATTTACTTAAATGCGCGGATATTTATTTCGGATTGCTTCCATTAGAAGTAAGAAAGCTTGCTTTTCAGTGCGCTACATCAGATGACGTTAAAAACATTCCGACTTCTTGGCACAGAAATAAAATGGCCGGACCAGATTGGTTTAGCAAATTTATGGAAAGAAATCCAATACTGTCACTTAGAACACCAGAAGCTACGTCTCTGAGCAGAGCAACATCTTTTAACAAAGCGAACGTGGAGActgttttttcgaaatatcaagAGGTCCTACGGAAACACAATCTTTTAGCCTCTCGCATTTGGAACGTCGATGAGACGGGAGTAACAACCGTGCAAAAACCAAAATAA
- Protein Sequence
- MRNYKRKSERASKSEDVYGLAAKEILEKGTTVRKAAQLFDICHVSLHRFMKKKKNNEPLSVGYGKPRLVFAPAEEEQIASYLLKCADIYFGLLPLEVRKLAFQCATSDDVKNIPTSWHRNKMAGPDWFSKFMERNPILSLRTPEATSLSRATSFNKANVETVFSKYQEVLRKHNLLASRIWNVDETGVTTVQKPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -