Tscr022547.1
Basic Information
- Insect
- Tenthredo scrophulariae
- Gene Symbol
- -
- Assembly
- GCA_963978835.1
- Location
- OZ022234.1:5345037-5345711[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-08 4.1e-05 24.0 0.0 4 37 18 52 18 57 0.94 2 2 1.8 2e+03 -0.6 0.0 21 28 177 184 174 187 0.89
Sequence Information
- Coding Sequence
- ATGCCTAAATTCAAAGATAGAAGTACAAGCCGAGGGAACTGGAGTACAGTAAATATGAAAAGAGCAATCCAAGAAGTACTTGAAGGCAAGATTTCTGAGAGAGCTGCAATAGATAGATACCAAGTTCCACGCACTTCACTGCAGGATCGTGTTGTGGCTATAAAACAAGGTCGTCAGATTATCATCGCGCCAAAACTAGGGCGTTTTCAACAAACATTTACCCCTGAATTTGAAAGGCAATTGTGCAAGCATGTTGTTGATCTTGACAATCGTCTTATGCCCTTAACAAGAAGTGAGTTCCTACGCCTCGCCTTCGATTTAGccgaaaaaatcaaaattccgCACAGGTTCAACAAACAGAAACGAATGGCTGGAAAAGATTTCTTCGGTGCCTTTAAGAAGAGAAATCCAAATTTATCATTAAGAACACCCGAGGCTACAAGCTTGATGAGAGCTACAGGTTTCAATAAACCTCAAGTTGATCGGTTCTATGAACTTCTGCTAAAACTCCTAGTAGATTCCAAATTCCAGGCTTCTCAAATATATAATGTCGACGAAACAGGAGTTACAACAGTTCACAAAAATGATAAGGTATTGTCACAAAAAGGAAGAAACAAGTTGGGAAACTCACGTCAGCAGAACGAGGTCGTAACGTCACTGTCACGTTTGCAATGA
- Protein Sequence
- MPKFKDRSTSRGNWSTVNMKRAIQEVLEGKISERAAIDRYQVPRTSLQDRVVAIKQGRQIIIAPKLGRFQQTFTPEFERQLCKHVVDLDNRLMPLTRSEFLRLAFDLAEKIKIPHRFNKQKRMAGKDFFGAFKKRNPNLSLRTPEATSLMRATGFNKPQVDRFYELLLKLLVDSKFQASQIYNVDETGVTTVHKNDKVLSQKGRNKLGNSRQQNEVVTSLSRLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -