Tscr025670.1
Basic Information
- Insect
- Tenthredo scrophulariae
- Gene Symbol
- -
- Assembly
- GCA_963978835.1
- Location
- OZ022235.1:9496966-9498738[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.8e-10 9.5e-07 29.2 0.0 4 37 18 52 18 57 0.94 2 2 8 8.6e+03 -2.7 0.0 21 28 154 161 154 162 0.92
Sequence Information
- Coding Sequence
- ATGCCTAAATTCAAGGATAGAAGTACAAGCCGAGGGAACTGGAGTACAGTAAATATGAAAAGAGCAATCCAAGAAGTACTTGAAGGCAAGATTTCTGAGAGAGCTGCAGCAGATAGATACCAAGTTCCACGCACTTCACTGCAGGATCGTGTTGTGGCTATAAAACAAGGTCGTCAGATTATCATCGCGCCAAAACTAGGGCGTTTTCAACAAACATTTGCCCCTGAATTTGAAAGGCAATTGTGCAAGCATGTTGTTGATCTTGACAATCGTCTTATGTTCAACAAACAGAAACGAATGGCTGGAAAAGATTTTTTCGGTGCCTTTAAGAAGAGAAATCCAAATTTATCATTAAGAACACCCGAGGCTACAAGCTTGATGAGAGCTACAGGTTTCAATAAACCTCAAGTTGATCGGTTCTATGAACTTCTGCTAAAACTCCTAGTAGATTTCAAATTCCAGGCTTCTCAAATATATAATGTCGACGAAACAGGAGTTACAACAGTTCACAAAAATGATGAGGTATTGTCACAAAAAGGGAAGAAACAAGTTGGGAAACTCACGTCAGCAGAACGAGGTCGTAACGACACTGTCACGTTTGCAATGAATGCTGCAGGTCACTTTATACCACCCATGTTTATTTTtccgaggaaaaaaatggataaaaatggGCGACTGATGATCGGTGCTCCACCAGAAAGCATTGGTGTTGCTTGTGAGAGTGGTTGGATGAATGCGGAGCTATTTCAGCGATGGCTACAACATTTTCAACAGCATGCTCATTCTTCTGTGACTCGTCCGATTCTTCTAATATTGGATGGACATAGTAGCCATACAGATCTGAACGTTATTGAATATGCTCGGGAAAATCACATCCACAAGCTGAGCATTCCTCCGCATACAACTCATAAAATTCAGCCGCTTGACCGTGTGTTTTTTAAGCCTTTCAAACAAGCTTACGGGTCAGCAAGTGCATCATGGATGCGACAAAATCCTGGTGCTCGACTGACGGAATACGATATTGCTGGACTCGTCAGCACGGCATTCGCCAAAGCTGCTAGACTGGAAATAGCTCAAAATGGTTTCCGCTGTACGGGAATCCAGCCCTTCAATCGAGACATTTTTTCAGAGTTGGACTTCTTGGGTTCTACTTTGACTGATATTCCACTGGCTGATGATCAGGCTAACCAATCAACGACTCAGGTTTCTAGTCATGCAGTCTCTGAGAACGAACCGGGACCATCAACTAGTGACGCACCTGAGGCCTCAGCTACCTTTCAGAGAGAGGTTTTAAACACATCGGCCAATGTTGAAAAAGTTGATGATGTACTGAAGATTTTATCGCCTCTTCCGGACGCCTCTGGGAAAAGAATGACTGTTAGAAAGAGGACCCAGAAAaGaccaaaaaattatcaaaaaaaaaacaatcctACACCTGAACGTAGTCCTCTTCAGAATCCGGAAACAGAATGTATTATATGTGGCGAAACATTCGATGAGGATTGGATCCAATGCCACATATGTAAAGACTGGGCTCATGAGGCATGTGTAGATATAAGTTCATGTGACTTATACTACAATTGTGATGTTTGTGTTGCTAAAAAACGATTGCGTCAATAA
- Protein Sequence
- MPKFKDRSTSRGNWSTVNMKRAIQEVLEGKISERAAADRYQVPRTSLQDRVVAIKQGRQIIIAPKLGRFQQTFAPEFERQLCKHVVDLDNRLMFNKQKRMAGKDFFGAFKKRNPNLSLRTPEATSLMRATGFNKPQVDRFYELLLKLLVDFKFQASQIYNVDETGVTTVHKNDEVLSQKGKKQVGKLTSAERGRNDTVTFAMNAAGHFIPPMFIFPRKKMDKNGRLMIGAPPESIGVACESGWMNAELFQRWLQHFQQHAHSSVTRPILLILDGHSSHTDLNVIEYARENHIHKLSIPPHTTHKIQPLDRVFFKPFKQAYGSASASWMRQNPGARLTEYDIAGLVSTAFAKAARLEIAQNGFRCTGIQPFNRDIFSELDFLGSTLTDIPLADDQANQSTTQVSSHAVSENEPGPSTSDAPEASATFQREVLNTSANVEKVDDVLKILSPLPDASGKRMTVRKRTQKRPKNYQKKNNPTPERSPLQNPETECIICGETFDEDWIQCHICKDWAHEACVDISSCDLYYNCDVCVAKKRLRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -