Tmes009484.1
Basic Information
- Insect
- Tenthredo mesomela
- Gene Symbol
- -
- Assembly
- GCA_943736035.1
- Location
- CALSEY010000088.1:432106-435329[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0057 1.2 11.1 0.1 2 23 465 488 464 488 0.95 2 10 0.01 2.1 10.3 1.4 1 23 494 518 494 518 0.98 3 10 3.7e-05 0.0078 18.0 0.4 1 23 524 548 524 548 0.97 4 10 0.00088 0.18 13.6 1.3 3 23 556 578 554 578 0.95 5 10 0.0014 0.29 13.0 2.4 1 21 585 607 585 609 0.95 6 10 0.0023 0.48 12.3 0.3 2 23 617 640 616 640 0.91 7 10 1.6e-05 0.0034 19.1 1.8 1 23 646 670 646 670 0.93 8 10 6.7e-05 0.014 17.2 1.1 1 23 676 700 676 700 0.96 9 10 5.7e-05 0.012 17.4 1.7 1 23 706 728 706 728 0.99 10 10 9e-05 0.019 16.8 0.1 1 23 812 837 812 837 0.97
Sequence Information
- Coding Sequence
- ATGTCTCGTAAAGGAGTCGCACCCGGTGCAGGTAGTAGGTCGAAAAAGATACCGCGGATATTTCAACGTCGTCGAAGCACAAGCCCAGCACGATATCCGGGTCCATCATCGTCGACGGATCTCATCTCCGTCTCCACATCCACATCCGCCGCTGTAGTAGAACAAACTTTTTGTTATCAATCAATCACTGTATCAGATCAGTATAACAAAACGAAAAAAAATAAATCGTCCAACACGTTGAAGCCGAACATTGCTCAAAATCAAAAATCATCAACAAACAACAACAACTGTTACGCGTCGAAATTATTGACTGTTGATAATAACAAGGATGCAGAAATAGTAGCGAATATTGAAAAATGGTTGAAAACACGTACCGAATCTGTGTCCAGCATGGATCTGGACACGATAAAATCCGAAGTCGAGGAAGTGTCAGGCGACGATAATCGATATTTAGCCGATGATTTGCCACATTCATTTCTTGGCAAAAATACCGACGTTTTATCAATGGACATTGATTTGTCGGACAAGAAACTAGCCTTGGGATACGATCCATTACTACAGGATATTCGCAGCGATAAACTTCTGGAAGCTTGCGAAAAGGACGAATTCATTCTACAGCCTTTTCAGCTCGATCATTTAGACTCTCTCGCTTTAACTCCAGACGACATGATGGTAGCCGGTGAAATTCTGCCATCAGCTAGTAACCAGGCATTAAATAATCCCGGGATTTCTGTTGGCGGAATAACCAGCTTAATCCAAGAGCAAAACTGCGCCAGAAGTAGGATCGAGGATAAGGAGAGCCGGCTTAAAGGAATACGGAATAACGACAAAGAGTCGGCGAAAAGAATCGTTAATGTTTACGTCGAGGCGGTAGGACATGTTGACGTTGAAACTAACGCCGTAGAAACATTGGGGAATGGTTTAAACGAGACTGAGGAAGGCGGTGGTAATCCGAGGCCGAAGTTAAAGACTAAACTTGAACCAAGGATAATAAAGAAGAGGAGAAAAGCACTGGCTAAAAATGAGAACGGGTCTTCGTTCAGGGTAATCAAAACCGACGAACAGTCGAGGAACAACGATGGGATAATGGCTGTTGTTGCCATATCTACAGATAAGATATCGAACATGACACAGATAGTGATAAACACTGGAAAGGAGGAGCAGATCTATCAAGGAAAAACATCCGAGCTTATCGAGGCAACTGGTAACTTTCCACAGTTGTCTAGGATCCAAAGTTCGTGTAATGAAAATGATCACGGAGATGACATCGTCGCCGATGGTTGTTCTAACAGCACCGAACACGACATTGTTATATCTAACGCTTTGGAGGAACTTGGCATCACCGATGATACTCTGGAACCTATATCGTCCAACGAACATGGCAAACTCTGGGTCTGTCCTAGAGATGATTGCAGGAGGCAGTTCAACAGGCTTTACGCACTTAAAGGACACGTTTTGTCACACTATGGAGTTAGACCGTTCAAGTGTGACTTCAAGGGATGCGCCTGGGCCTTCTATTCTGAATTTAAATTGAAACGTCACAAAGAGACGCACCTAAAGCGGAAAGACTATGTCTGCGAGGTGGAGGATTGCGGCCGTAGATTTACAACTATCTACAATTTACTGACGCACAAAAAGCTGCACAATCGACCCAGCAAGATTTTTTGCCATGTACCAAACTGCCAGGAAAGATTTCAGACAAAAAGAGCATTAGAACTCCACATGCGGTCACACGATCAGAGCCACGCGCCTTATGTTTGCAAACAAGAAGGCTGTGGCAAGAGGTACTACAGCAGCAACGCACTAACCAGTCATCAAAGATGCCACAGCTACAAGGAAAGCGATATTAAATGTGCGTGGCCAGGGTGCGGCAAACTATTTGACAAACCGTGCCGCTTAAAAGCACATATTAGATCCCATACCGGGTACAAACCGTATCTCTGTACTTTCCAAGGTTGTAATTGGGCATTTTCATCGTCAAGTAAACTGAAGAGACACCAGAAAAAGCACACAAACGAAAGGAAGTTTGTCTGCGATGTTACGTCGTGCGGAAAGGCTTTCATGAGGTCAGAACACCTAAAGGAACACAGATTGACCCACAAAGATGGCAGATACTTTCAATGCCATATGTGCGACGCTAAATTTGCTGCAAAAAGCAGCCTCTATGTTCACATAAAGAAACATCAAACCCAGGAGGTGGTATCATCCCTTCAAAACACCTTAATATTGCCGGAACCACAATCTGAAACCGATCAAGAAACTTATTCAGTTGTTAACGACTACGAGTCTAACATTCAAAACTCTGACATCAATCAGGACGAGGACCCTTCGCCGCATCTTGATCTCGACCTAGATTTAGATCCAGTTGTTGTCGACGCACCCTTGGCTAGTGCAAACCGAAGTATAACTCATCCGGACTTGGTCAGAATGGCTTATCGCTGCCCAATAGAAACCTGCACTAAAGTATACGCGGCTAAATCTACGCTAAGAGCTCATATGCTTAGGATTCATGGCTCTAAAAGCAGGGATCAGAAGATTCTTAACAACGATGTAGCTGGCTGCATGACTGGGTCAAGTTCAGATTATGTGACTTATTCAACGTCTCCTGTGTCTCAGTCCGCAGATCATATGATCATGATAGCTCCCCACGAAGCCCTGGTTGTGAGTTCCCCAGAGTTAGAGTCACCCTCTTTTAACTCTATTATGAAATTATCAGAATCGAGCGAACAAAGTTCTGCCCAATGTCTAGAAGAGTGCACAGATGATAGAGACGAAGATAACGAGAGATGTGCAAGAACAGATTTGACCTATAATGACTTTCTGAGGTTCAAAGCTAACAGTACTATATTTAATTCTGTTGTTGGCGCAACAGATGTTGTTCTTGGCGCTGCTGGACTAGTCGAAGGCTTATTGCTACCCGATGATTTGCCGTCTGTTTATTATCAGGATGATATTGCCGGGACTGAGTGCCAGGTATTACTTCTTGACTCTGGCCCTCCGGAGAGTACGATAAACCTTCGAGACCTTGAATGA
- Protein Sequence
- MSRKGVAPGAGSRSKKIPRIFQRRRSTSPARYPGPSSSTDLISVSTSTSAAVVEQTFCYQSITVSDQYNKTKKNKSSNTLKPNIAQNQKSSTNNNNCYASKLLTVDNNKDAEIVANIEKWLKTRTESVSSMDLDTIKSEVEEVSGDDNRYLADDLPHSFLGKNTDVLSMDIDLSDKKLALGYDPLLQDIRSDKLLEACEKDEFILQPFQLDHLDSLALTPDDMMVAGEILPSASNQALNNPGISVGGITSLIQEQNCARSRIEDKESRLKGIRNNDKESAKRIVNVYVEAVGHVDVETNAVETLGNGLNETEEGGGNPRPKLKTKLEPRIIKKRRKALAKNENGSSFRVIKTDEQSRNNDGIMAVVAISTDKISNMTQIVINTGKEEQIYQGKTSELIEATGNFPQLSRIQSSCNENDHGDDIVADGCSNSTEHDIVISNALEELGITDDTLEPISSNEHGKLWVCPRDDCRRQFNRLYALKGHVLSHYGVRPFKCDFKGCAWAFYSEFKLKRHKETHLKRKDYVCEVEDCGRRFTTIYNLLTHKKLHNRPSKIFCHVPNCQERFQTKRALELHMRSHDQSHAPYVCKQEGCGKRYYSSNALTSHQRCHSYKESDIKCAWPGCGKLFDKPCRLKAHIRSHTGYKPYLCTFQGCNWAFSSSSKLKRHQKKHTNERKFVCDVTSCGKAFMRSEHLKEHRLTHKDGRYFQCHMCDAKFAAKSSLYVHIKKHQTQEVVSSLQNTLILPEPQSETDQETYSVVNDYESNIQNSDINQDEDPSPHLDLDLDLDPVVVDAPLASANRSITHPDLVRMAYRCPIETCTKVYAAKSTLRAHMLRIHGSKSRDQKILNNDVAGCMTGSSSDYVTYSTSPVSQSADHMIMIAPHEALVVSSPELESPSFNSIMKLSESSEQSSAQCLEECTDDRDEDNERCARTDLTYNDFLRFKANSTIFNSVVGATDVVLGAAGLVEGLLLPDDLPSVYYQDDIAGTECQVLLLDSGPPESTINLRDLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01412590; iTF_01411792; iTF_01414448; iTF_01303693; iTF_00938998; iTF_00939856; iTF_00060603;
- 90% Identity
- iTF_01411792;
- 80% Identity
- -