Tmes013750.1
Basic Information
- Insect
- Tenthredo mesomela
- Gene Symbol
- lola
- Assembly
- GCA_943736035.1
- Location
- CALSEY010000142.1:324109-334088[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.02 4.2 9.4 6.1 1 21 54 74 54 78 0.89 2 14 0.00011 0.022 16.5 0.5 1 20 94 113 94 115 0.94 3 14 0.00017 0.036 15.9 0.5 2 23 122 143 121 143 0.97 4 14 0.042 8.8 8.4 1.8 1 21 179 199 179 200 0.93 5 14 0.00071 0.15 13.9 2.8 1 20 305 324 305 326 0.95 6 14 0.0025 0.52 12.2 3.6 1 23 334 357 334 357 0.97 7 14 0.011 2.4 10.1 0.4 1 19 462 480 462 482 0.96 8 14 0.0036 0.74 11.7 0.9 1 23 491 514 491 514 0.96 9 14 6.5e-05 0.013 17.2 3.6 1 21 566 586 566 587 0.94 10 14 0.003 0.63 11.9 0.1 1 21 595 615 595 616 0.95 11 14 0.0029 0.61 12.0 2.0 1 19 646 664 646 666 0.97 12 14 0.00015 0.031 16.1 0.3 1 23 675 698 675 698 0.97 13 14 0.016 3.3 9.7 2.4 1 19 725 743 725 746 0.92 14 14 7.7e-05 0.016 17.0 1.6 1 23 755 778 755 778 0.97
Sequence Information
- Coding Sequence
- ATGTACGCTTCGCCAAACTCCATAATTTACAAAGTGCCCAATTCCTACAGCGATAGTCACATTGAATCTTGGAGTGTGTTTTTGCCGGAGCCAACTTTTGATCTTTCCGATCAATCTCCAGCTCACGAAACTGCCTCTGAATCAACTTTGCAGCGTCAATTCGCTTGTGTATTTTGTGGCAAATGTTACACAGAGAAAAGATACTTGATGAAACACCAGGGAAAATTTTGCCACAAAAATCCATCTTCGTTAAGGAATAAATCCGTAGTTGTTAAGCCTTTCCAATGTCACACATGCGGATCTGCTTTCTCTCGACAACGGGACCTGATCCAACATGCGACACGTGATTGTGGCCGTACTACAGAATGCCCTATTTGCGGAAGGATATTCTCTTGGAGATCTAGCTTTTACAAGCATAGAAAAGTACATTGCGGTCCTCGGCTTGGACTCGCTGACAATCCGAGACTGCTGCCTAAGAAACGAAGACGAACTATGCCAAAGCAACGAAAGGAAAGGCTGCCAGAACCACAAGCATATTATTGCGAATATTGCAATCGAAAATATGAGAAACAGAGAAGCAGAAATTCACATCGTCTAATGGATTGTATACAAAATCCAAATGCCCGTTGTAACACGACAGTTCTCCAGTGTGCTACGTATTACCAGCATCTCCGAGGACATGGAGATTTCAATAACGACATAACTACTACGGATATATCGTTAAACAAATCAAATCCATTCCTGACGTCTTATCAACAACGCTATCCACAAATTGAATCAGACAAAACTATTACCACGCAAGATAATTTGTTTTCCACACTGAATATTGGTAGTCTATCTGCGACTGAATCTGATCCACTTGGCAGTATTAATTGCTTGATACCAGACAGTCATCAGGATCGACTAAAAAAATTTGTCTGTCCCAAATGCGGTCATAGCTACAAGTATCAAGCGGACATGAGAAAACACTATCATTTCCAATGTGGGCAGGATCCTAGATTCAAGTGCCCTTACTGTATTAAAAAATGCAAAACTTCTTCCAATATGTATTCCCACGTAAGATTGATCCACACAAATGAAAAGCCGTACATTATTGATCTGTATACACAATCAAAAGAAAAGGAAGACTCACGAGACCCCGAATCTCATGATTCCCACAGCCATAAACCATTTGAACATATCAACATGCAGGATGTTTTCAAGGTCCAAGTGTATCAGAGAAAAGATACAGAAGAGTCAAGCGACACATCAAGCCGTCCTGTTCAGAACTATGTAAAGCAGAATTATCTCCACGGTGTGGCTTGTGACGAAGAATTCTCTCAAGTATCTATAACGCAGCAAATGTCAAACCACCATCAGCATGCATCTGATAGCAAAAAACCATTCCAATGTCTGACGTGTAATCAAGGATTTTCCACGCGACAGAGTTGGAGCAGACATTCGATCTTTCAATGTGGCAAACCGCCACGTTTTCAGTGTCCCTATTGCAATAATAAATCTAGAAGATCGTGGAATATTTACATGCATATACGTGCAAGACATCCTGATGTTACAGGACCCCTCTATTATCTCAAGAGGCCCTACCACCAGACGAGGGATGAAACTTACGAAAATGAGGATTACCTGCCGGCTCTAGATTCTGAAATGCTGATGGGCCACAAGTGGAACTATAGAAACCCCTATCAAGAAGAAAGACATTATTGTCCTAAATGCGGACGAAGCTATTCGCGTAAAGATCATATGAAGGAACACTATAAATATGAGTGCGGAAGACCGCCGAGATATCAATGCCCTTATTGTCCCAGTGTTAGCAAACAGCCAGGAAATATGTACAAACACGTTCAATCACCTTCGTTCAGCATACTCTGGGTTCCGAGTATAGATGGAAAGAAGGGTAGAGGAGTATTCGAAGATGGCGAAGAGCTCGCTGTTAGGTTTCAATGTCCAAAGTGTGAACGGACTTATAATCGTCTTGACAACATGAAATATCACTGTAAACATGAGTGTGGAAAGTCACCAAGATTTGAATGTCCATATTGCGGTCTTCAAGGCACCAGATCGTCCACTATATATCGTCATATAAGAATAAAACATCCAAATCATGCGATCACCTTCTTGCCTGGACGCATGGAGTACAAATCTAAAACTGCAGCTAAAGGTGGTAGACACAGATATGCTTGTCCTAAATGTGGAAAAAGTTATACAGCTAAATGCGCAATGACCGCACACTGCAGATACGAGTGCAGTGGAACGCTACCAAGATTTGAGTGTGCACATTGTGGAAAATTGAGCAGGAGAAAATATAACGTTAAGGCTCACATAAGATACGTACATCCAACAGAAGCTCAGATATTTAACGTATTGTACTGA
- Protein Sequence
- MYASPNSIIYKVPNSYSDSHIESWSVFLPEPTFDLSDQSPAHETASESTLQRQFACVFCGKCYTEKRYLMKHQGKFCHKNPSSLRNKSVVVKPFQCHTCGSAFSRQRDLIQHATRDCGRTTECPICGRIFSWRSSFYKHRKVHCGPRLGLADNPRLLPKKRRRTMPKQRKERLPEPQAYYCEYCNRKYEKQRSRNSHRLMDCIQNPNARCNTTVLQCATYYQHLRGHGDFNNDITTTDISLNKSNPFLTSYQQRYPQIESDKTITTQDNLFSTLNIGSLSATESDPLGSINCLIPDSHQDRLKKFVCPKCGHSYKYQADMRKHYHFQCGQDPRFKCPYCIKKCKTSSNMYSHVRLIHTNEKPYIIDLYTQSKEKEDSRDPESHDSHSHKPFEHINMQDVFKVQVYQRKDTEESSDTSSRPVQNYVKQNYLHGVACDEEFSQVSITQQMSNHHQHASDSKKPFQCLTCNQGFSTRQSWSRHSIFQCGKPPRFQCPYCNNKSRRSWNIYMHIRARHPDVTGPLYYLKRPYHQTRDETYENEDYLPALDSEMLMGHKWNYRNPYQEERHYCPKCGRSYSRKDHMKEHYKYECGRPPRYQCPYCPSVSKQPGNMYKHVQSPSFSILWVPSIDGKKGRGVFEDGEELAVRFQCPKCERTYNRLDNMKYHCKHECGKSPRFECPYCGLQGTRSSTIYRHIRIKHPNHAITFLPGRMEYKSKTAAKGGRHRYACPKCGKSYTAKCAMTAHCRYECSGTLPRFECAHCGKLSRRKYNVKAHIRYVHPTEAQIFNVLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -