Tmes012192.1
Basic Information
- Insect
- Tenthredo mesomela
- Gene Symbol
- -
- Assembly
- GCA_943736035.1
- Location
- CALSEY010000119.1:1106854-1109980[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.084 17 7.4 0.3 2 23 347 368 346 368 0.84 2 12 0.0042 0.88 11.5 1.1 2 23 440 462 439 462 0.95 3 12 0.00011 0.023 16.5 0.2 2 22 495 515 494 515 0.95 4 12 7.5e-06 0.0016 20.2 1.5 1 23 528 550 528 550 0.98 5 12 0.00087 0.18 13.7 0.3 3 23 557 577 556 577 0.99 6 12 1e-05 0.0021 19.7 1.4 1 23 583 605 583 605 0.97 7 12 1.1e-05 0.0022 19.7 0.4 2 22 674 694 673 694 0.95 8 12 6.7e-05 0.014 17.2 0.4 1 23 707 729 707 729 0.97 9 12 0.025 5.1 9.1 2.1 1 23 735 757 735 757 0.98 10 12 7.1e-05 0.015 17.1 0.2 1 23 763 785 763 785 0.94 11 12 0.0017 0.35 12.7 0.8 1 23 791 813 791 813 0.98 12 12 0.033 6.8 8.7 0.2 1 20 819 838 819 840 0.93
Sequence Information
- Coding Sequence
- ATGGAGTGGAAAAGAAGTGACGATATTAGGTCACGAAGTGAAATTGAAAATAACATAAAGGTAGAACCTGCCATAGAAATATATTCAACTGTGTATGAAAATGGTGGGACACTAGTCGAGCTAAAATCTGATATAGAAGAAGATTTCTATGCAGTATTGGAAGCATTGAAATACGAAGATTCGGATACAGATTACCAAAATTCTGATTTATCATCTGATGTTCATAGAACTCTGAAATCAGCACAGAGCTGTGAATATTCTAAATTTATATCTGAATCGCTATGTAGACTTTGCGCAACTCCATGCGATTCTATGGTCTATATTTTGGACCAAAATGAATCTGAAAATAATATCATAGATCAGATCGAATACTGTTTTCCTATCAGGGTAAAAAACGGCGATACTCTACCAAAAAAGATTTGCCAATTGTGCCTCGAGAAGTTAGAGCCGTGTTATCAATTTCATAAAACTGTAGCTGAGGCTGAGAAACGATTTCTTATGCTTAATAATGGAGAAGTTAATGAGAAAAGATTGAAAACACTGTCCGCTCTTGGCAACGAGTCACAGATTGTTCCCAAAAAACTTGAAGCAACAAACACTGCAATTATTGAAAATGGCACTGTTCTACCAAATGCAAAACTTCAGAATGAAAAGCGTATAACTAGGAGTTTAAGCCGTCAAAATCAGACTATCTCCAATTCTGGAATGAATCGCTCATTGTCAGACAATGATATGGAAGAATCTGGAAGAATCTGTAGGGATACTGCGGTTATTGAAAATGAAGCTGTTCCGCAAAATACGAAGATTCAGAAAGAGAAACGTGGAACGAAAAGTCAAGCTTTGGCAGGAGATGATCTGGAAGAGTCTGGAAGATCTGGAAGATTTCCGTCTATTCCTAAATTCGATTTTCCTCTAATAATCAGGAAACATACAGAACCTGATAGCTTGAAAGAAGAGACAAGAGATGATAATTGCAATGATGATATTGTAGCACGTAAAAAGGTGCCTAATGGCCAGAATATTGATGCTCAAATAATAAGTTGTCGAATTTGCGATGAAACTTTTAAGACTGCAATACAAGGCTTTAGACACTCGAGCATTCATGCATCTACAAATTACTACCCCTGCTGTTGGTGTAGTGAAATTTCATTGACTGCAAAAGATTGGTATAAACACGAGCTAAAACATGAAGAAGGTAAAATTTTAAGAAGAGAAGTGGAGACCAATAGCGATAATGAATCTCAAAAGAAATGTCCAGAAAAAGAAAAAGCAAAGTCTGATAAACTGAAGCAGAAAATTGGTGAAAAAAAAAATTTGAAATGCGATAAATGCGATGAAACTATGGACTCAAAGAAATCTTTACACCAGCATATGATCATTGTACATAAACAGCATAAAAAATCATCTCAAAACCTATGCCAAAAGGAGTTGAGAATCTCTGACCAACTTACTGCTCCTGAAAAAGATTCCAGTTTTAGTATAGAATGCAAATTGTGTGGTAAAAAATTCGGCTCTAATTTCTTGCTGGAAGTGCACCAACGGAGTGACTGCAGTAAAACGCTTGTAAAAGCGGATAAAAACTTTGTATGCACATATTGTGGAAGTCAATTTGACCAGAAATTCAATCTGAAAGTTCATCTACAAACACACACGGTAAAATCACATGGATGTGATATATGCGGTAAAATGTTCAGAACTGAATTGAGCAGAGAAGATCACCGTAGAGTACATACTGGTGAAAAACCGTTCAAATGTTCAATGTGTGACAAAACTTACAGTAGAACGACTACGCTAAAAAACCATGTTGCCATTCATTGGGGTATCAAGCCACAGATTATTATTCCAAATCTGGTAACAACAGATACTACAATTATGGAAAATGAGGCTGTTTCACCAAATGCAAAACTTCAGAGGGAAATGCATAGAACGAGGAGTTCAAGCCATAAAAATCAGAGTGTATATAAACAGCATAAAACTTCATCTCAGAACGTATGCCGTGGGAAATCAAGATTCAGTACAGAATGCAAAATGTGTGGTAAAAAATTCAGCTCTAATTTCTTGCTGGAAGCACACCAACAGACTGACTGTAGTAAAGTGCTTATAAAGGAGAAAAGAAAATTTGCATGCACGTATTGTGGAAGAAGATTCGGCCTGAGAACATCTCTGAACATTCATCTACAAATACATATGAGAGAACAGTCCTATGAATGTGATCTATGCGGTAAATTGTGCAGAACTGAAATAAGCAGAGAATATCACCGTAGAATGCACAATGGTGAAGCCCCGTTCGAATGTTCAATGTGTGGAAAAGCTTTCAGTAAAACTACTGCACTAAGAGATCATGCTGCTCTTCATTCGGACATTAGGCTTTATAAGTGTTCTCTGTGTTCTTCATCGTTTAGAACACCAGGCGAGAGAAAAGACCACCAAGGAACACACACAGGGAAAAGACCGCATGAATGCGACATTTGTGGTGCTGATTTTAATCTAAAACAAAATATGGACCGTCATAGGGGAACTAAATTTTGCCGAGAGAGAGCGGCTGCTAAAAATCTAAAGTGA
- Protein Sequence
- MEWKRSDDIRSRSEIENNIKVEPAIEIYSTVYENGGTLVELKSDIEEDFYAVLEALKYEDSDTDYQNSDLSSDVHRTLKSAQSCEYSKFISESLCRLCATPCDSMVYILDQNESENNIIDQIEYCFPIRVKNGDTLPKKICQLCLEKLEPCYQFHKTVAEAEKRFLMLNNGEVNEKRLKTLSALGNESQIVPKKLEATNTAIIENGTVLPNAKLQNEKRITRSLSRQNQTISNSGMNRSLSDNDMEESGRICRDTAVIENEAVPQNTKIQKEKRGTKSQALAGDDLEESGRSGRFPSIPKFDFPLIIRKHTEPDSLKEETRDDNCNDDIVARKKVPNGQNIDAQIISCRICDETFKTAIQGFRHSSIHASTNYYPCCWCSEISLTAKDWYKHELKHEEGKILRREVETNSDNESQKKCPEKEKAKSDKLKQKIGEKKNLKCDKCDETMDSKKSLHQHMIIVHKQHKKSSQNLCQKELRISDQLTAPEKDSSFSIECKLCGKKFGSNFLLEVHQRSDCSKTLVKADKNFVCTYCGSQFDQKFNLKVHLQTHTVKSHGCDICGKMFRTELSREDHRRVHTGEKPFKCSMCDKTYSRTTTLKNHVAIHWGIKPQIIIPNLVTTDTTIMENEAVSPNAKLQREMHRTRSSSHKNQSVYKQHKTSSQNVCRGKSRFSTECKMCGKKFSSNFLLEAHQQTDCSKVLIKEKRKFACTYCGRRFGLRTSLNIHLQIHMREQSYECDLCGKLCRTEISREYHRRMHNGEAPFECSMCGKAFSKTTALRDHAALHSDIRLYKCSLCSSSFRTPGERKDHQGTHTGKRPHECDICGADFNLKQNMDRHRGTKFCRERAAAKNLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -