Tmes006880.1
Basic Information
- Insect
- Tenthredo mesomela
- Gene Symbol
- -
- Assembly
- GCA_943736035.1
- Location
- CALSEY010000064.1:381654-384540[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.6e-05 0.0033 19.1 4.0 1 23 267 289 267 289 0.97 2 12 0.14 29 6.7 0.8 2 23 295 316 294 316 0.93 3 12 8.3e-05 0.017 16.9 0.9 2 23 327 348 326 348 0.97 4 12 4.6e-06 0.00095 20.8 8.4 1 23 447 469 447 469 0.98 5 12 0.0015 0.32 12.9 1.1 1 22 474 495 474 498 0.90 6 12 2.6e-06 0.00055 21.6 0.6 1 23 537 560 537 560 0.93 7 12 7.9e-07 0.00016 23.2 1.1 1 23 594 616 594 616 0.98 8 12 0.00017 0.035 15.9 4.0 1 23 630 652 630 652 0.96 9 12 0.00016 0.033 16.0 4.7 1 23 658 680 658 680 0.98 10 12 0.0014 0.29 13.0 3.2 1 23 686 708 686 708 0.98 11 12 4.8e-05 0.01 17.6 6.5 1 23 714 736 714 736 0.98 12 12 0.00022 0.046 15.5 0.3 1 21 742 762 742 763 0.93
Sequence Information
- Coding Sequence
- ATGGACATTAAAATTGAAGAAAGAATCGCTGTAGATAATTTAGACGATGTTTGTCGTGTCTGTCTATCGTCAGATCAAAATAAAGAATTAATATTTCGTAATGAATATGAGACTTCAAAAATTGGGGATAAATTTAGCCTATCGCAAAAGCTTCAATTTTACGGTGGCATAGAGATTTTCGAGGACGATGGACTTCCTAATAAAATTTGCACACCTTGCATTTCTAAAATTATCGTTGCACACGATTTTCGTAATCAATGTCAAAAGGCTGATGAAAAACTCAGGAAATTATACGGCAAACCTGCACGTAAAAATAATTCCAAAAATCAAAAGGATCAGCAATGTCAAACAGATACATTTCTGTTGCCAGTCCGTATCAAGGAGGAAGTAAAAGATAAGACGATGCAGCAACAGCAGCAGCAACAGCAAAGTATTTCGAATATTGACTCTAGGAATGAGTTGGATAAAGACTTGCAACTATTTCCTAAAATTTTGTATAAAGATGACATTGAGATTGAAGAGCATAAAATTGTGCCTGATTTCTATGTCGATGAACATCAGTCAGAGAAAGGAAAAAATTTGTATAAAAAAGATGCGTACAGAACAAGGAGGGTTTCAATGTTTAAGAGAATGACTTCTATGGAGAATTTAAAAAGCCATAAAGAAAGACAAAGGCAATATATAAAAAAGAACGCAAATTTAAAGTCTGAATCTAACGAGCAGGATTTATGCATGATTAAAAATACTAGAATGAGATCTAACAGGTCGATTGATTTTAAATTGGATTCTGATCACTCGCACAAGTGTAGTAAATGCAATAGATCTTATTCTACAAAAAAGTCGTTGGAAAGACACGCGGCTACACACGAAGAGAAAAAATTGAAGTGCGATAAATGTAGCAAGCAATTTTTTATAGCTGAGAAATTGGTGGAGCATAACAAACTCCATGATTCCCAGGAGAAGCCTAAACCATCCGTATCATGTAAAATATGTGATAAAAACTTTAGGAAAACTGATACTATGGTCAGACATCTGAATATCCATAAAAAGGCTAATCCTAAAGAAGTATTTTCCATATTGAAAGAAATCAGAGACAAAAGAAAGGTGGAAAATAAAATGGAGAATTGCGATGACGATGGGAAAGCAGATAACAAAGAAGTAAAGGCTGAGCTTAGCAAGGAAGAAAGTAGCAGCGGAGATGAGCGAGAGACTGAGACAAAGGAGATGAGCAAACATCGTCTTCCAATGTCAAATGAAGATCAGGACTATAATCCAAATTCTCCAAACACAGAATCGCACAGCGAAAGTGAAACTGATTCTTTCAATAACTTGGCATTTTACAGATGTAAACATTGCACGAAATGTTACTCGACCAAAAAGTCACTGCAAAGACATATGTTGATACACGACGAAAAGAAATTTGTCTGTAACGTTTGCAATATGAAATTCTTCAGACCTGATAGACTGAAGAGTCACAGAGACAGATACGGGCATGACGAAGACAAGGAATGTACAGAACCACAGAAGCCGCCCGATGATAAATCAGCGATAAAATTAATAAACAGTTGGATAAGAGAAGAGCTGGATTCTGATAACGAGGGTAAAGGATTCCCCTGTGAAATATGCGGGAAATCTTACGTGACTAAAAAGTCTTTGCAAAAGCATAAAGCCAACATGCATGAAAGCAGAACAGATTTTTGCGCCATTTGCAAAGTTGAGAAATGCAAGTGCGTTGAAAAGGGTAGAGAAAACGAGAAAAAGGTTGAAAAATCTAAGCCGTTTAGTTGCGACGAGTGTAACAAGTCATTCGAAAAGGAATCTAAACTCGAAAAACATTTAAGAATTCACGAGCGTGCTAAAGAACAACAAGATTCTGATTTTAAACGATTTTTATGCCACATATGCAGCAAAACATTCAGACAAAATACTGGACTAATGTTTcacatgcgaacacatactgggtacaagccgcatgtgtgcaaatattgtggccgaggttttacttcgaattcaaattgcattaatcatgaaagaacacacactggggatcgaccttttgtttgtcatttttgtagcgcggcatttgcgaagtcgtgtactctgaaagctcacattacaactcataccggagaagctaactaccattgtaaaacttgtggcaaatcatttagaagattgaaatacttgaaagagcacagatttactcatacgggggaaaagccatacgcctgtaaaatttgtggtacagCTTACAGTCATTCTGGTAGTTTATTTGTTCATGAAAAAAAGTGCAAGGCTCAGTACAGCAACTATCAAACCGTGTCTGGACAAAATATACAAAATTATAGCCAGTCACAAAACAGCGTAAACACATCTTCAGTTATGACGCCTATAATTCCTATGCTATCTACTTCTCATCATTTAAGTAACATAAATAATCCTCTGGGAAGTAACGTGAATAAAAGTTATGTTGAAAGTATGCAGCGTATGAGCGCTCATGCGGCTGCTGCAGCGGCGGTCGGTAATCCTGCTTTGCACATTCATCCGAATCCCGATGTTTCAGAAATGGCTTCTGCAGTTAGGAGTTTTGCTATAATAGGACAAATGTTTCACTCGTAA
- Protein Sequence
- MDIKIEERIAVDNLDDVCRVCLSSDQNKELIFRNEYETSKIGDKFSLSQKLQFYGGIEIFEDDGLPNKICTPCISKIIVAHDFRNQCQKADEKLRKLYGKPARKNNSKNQKDQQCQTDTFLLPVRIKEEVKDKTMQQQQQQQQSISNIDSRNELDKDLQLFPKILYKDDIEIEEHKIVPDFYVDEHQSEKGKNLYKKDAYRTRRVSMFKRMTSMENLKSHKERQRQYIKKNANLKSESNEQDLCMIKNTRMRSNRSIDFKLDSDHSHKCSKCNRSYSTKKSLERHAATHEEKKLKCDKCSKQFFIAEKLVEHNKLHDSQEKPKPSVSCKICDKNFRKTDTMVRHLNIHKKANPKEVFSILKEIRDKRKVENKMENCDDDGKADNKEVKAELSKEESSSGDERETETKEMSKHRLPMSNEDQDYNPNSPNTESHSESETDSFNNLAFYRCKHCTKCYSTKKSLQRHMLIHDEKKFVCNVCNMKFFRPDRLKSHRDRYGHDEDKECTEPQKPPDDKSAIKLINSWIREELDSDNEGKGFPCEICGKSYVTKKSLQKHKANMHESRTDFCAICKVEKCKCVEKGRENEKKVEKSKPFSCDECNKSFEKESKLEKHLRIHERAKEQQDSDFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYSNYQTVSGQNIQNYSQSQNSVNTSSVMTPIIPMLSTSHHLSNINNPLGSNVNKSYVESMQRMSAHAAAAAAVGNPALHIHPNPDVSEMASAVRSFAIIGQMFHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01414402;
- 90% Identity
- iTF_01411757;
- 80% Identity
- -