Tmes003663.1
Basic Information
- Insect
- Tenthredo mesomela
- Gene Symbol
- -
- Assembly
- GCA_943736035.1
- Location
- CALSEY010000031.1:165032-167939[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.53 1.1e+02 4.9 1.4 2 12 285 295 284 306 0.81 2 18 0.0043 0.89 11.5 1.0 1 21 312 332 312 334 0.84 3 18 0.0016 0.34 12.8 0.4 2 23 348 369 348 369 0.92 4 18 0.016 3.2 9.7 1.0 2 23 377 399 376 399 0.95 5 18 5e-05 0.01 17.6 2.3 1 23 405 427 405 427 0.98 6 18 0.00022 0.045 15.6 2.3 1 23 433 455 433 455 0.97 7 18 5.2e-07 0.00011 23.8 2.6 1 23 461 483 461 483 0.99 8 18 0.34 70 5.5 0.0 2 21 495 514 494 515 0.84 9 18 0.6 1.2e+02 4.7 6.0 1 20 537 556 537 559 0.94 10 18 0.011 2.3 10.2 0.1 1 23 565 587 565 587 0.94 11 18 0.028 5.8 8.9 2.7 1 21 606 626 606 627 0.91 12 18 0.031 6.5 8.8 0.1 2 20 635 653 634 654 0.93 13 18 0.027 5.5 9.0 0.5 2 23 663 684 662 684 0.96 14 18 1.6e-06 0.00033 22.3 4.1 1 23 694 716 694 716 0.98 15 18 0.0036 0.75 11.7 1.3 1 23 722 744 722 744 0.98 16 18 0.00013 0.027 16.3 2.1 1 23 750 772 750 772 0.98 17 18 0.00066 0.14 14.0 0.4 1 23 778 800 778 800 0.98 18 18 0.00018 0.038 15.8 0.6 1 23 806 829 806 829 0.98
Sequence Information
- Coding Sequence
- ATGGAAATAGAATTAACAACAGAGTCAGATTCGCTATCGCTTATTGAAGAAGTAGTACAAATCAAAGTAGTACCAGATCAATATCGTATAGTTAAATTAGACCCTGAACTAGAAGAAGAAGAAGAAAAATTATGTCATGTAATTGGAGAGATAGGATCCACGGATGAGCCTGAGACAATAACTGGTGACATAGAAGAAACTGAAAATATAAACATATCAGATATTTCAAATTTTACTGAAACCTTATCAAGTCTGAATAACGATATAAATTATCCGTTGATATGCAGACTTTGCGCAACCAGAGGAAATGATATGATAAATATTTTTGGAAGGAATAAAAAGTACAAAGATATTATCAAAATGATTGATCAGTGTCTGACTATAGTGGTGAAGAAGTCTGATAGTCTACCAAAACAAGCTTGTCGTTCTTGCCTGGATAGACTTGAACTGTGTTATCAGTTTCATAAAACTGTGGCAGAGGCAGAAAAGCAGCTTCTCATATTGAGAGGAAAAATAATCAACAATACTAAGAAGAAAGAGAATTATTGTCAAGCATTGAAACTACAGTGCGATGGACAACGAGATTTAACTGGGCTCGATGGCAATCAAGAAATTATTAAGACTGTTATAACTGAAGAATTTCATAACATGGAGAAAACTGAAGAAGAAGAAGATGATATCGATCCATTGGATTTAGAGAGAATATCAAAGTCTGAAGATTGTTCAGGGAAGGAATTGAAAGATTCGGTAGAAATTGTTGACCAAAAATATGAGAACGATATTATTCTAATTAGGGAAAAGGGAGGGGAGGATGAGACTTCTACAGGCCAGAAAGCTGACTGTAAATTAATAAAATGTCGAATATGTGGAAAAGCTTTTCAGACTGTTAGAAAATGCTATATACATTCTAGCGTTCATGCTTCGAAAAATGACTACCCATGTGGTATATGCGATAAAACATTTACAAATGAGAAAGAGTGTAATGTACATAGCGCAGAACATATAGAGAGTAAAAAGTATGAAAGAAGAGTTGCGACTAATGTATGTAAGGAATGTGGTAAGAGATTTGTGACCCAAGCTAGACTAGAATTTCATCAAATCTACCATAATTCAAATAGTAAACCTTGTTATTGTGAAAAATGCAATAAAATGATGGCTTCTGAGGCTTCTCTGTATCAGCATATGCTCAGTGTACACAAACAGTACAAACAATACTGTTGCGACATTTGTGGAAATCAGTTTAGAGCTCAGTCCCAACTGTATGCCCATCAAAGAAAACACAAAGACGAACGTCCATTCGAATGTACAATTTGTAATAAAAGATTTTATTCCAACGATATACTAAGGCGTCATAAGAAGCTGCATCTTCCTGAAAAACCTTATCAATGTAATCAATGCGGTAAAAGATTCGACAGAAATAACACTTTGACTAAACATTTGTTAAAACATCAAGTTGAAGCTGGTGGATCAACGATATGCCAAGTTTGCAATATTTGTAAAGAAGTATTTGCAAGTGATGTAGCTGCTGAAATTCACTTAAAGAATTGTACGATCATCACAGAAGATAATGAGGATAATAAAATACTGAAATTAAACTTGAAGGAAACTTATAGATGCGAATACTGCGAAAGATGCTATACAGAAATTGAATATATGAAAAATCACAGGTCGTGTCATAGCAAACCTTCCGCATACATATGCACAGTTTGTGACACAGCGTACGCAACTTATAATCAAGTTACGGCGCATAAAACGGCGCATAAAAGGACCTCGAAAATTTCAGCTGTTAAAGATGAACTAGTAATCCCTAGATATTTCACCTGCGATTACTGCGATAAAAGTTTTCTTCATTTTACTAAGATGAATATTCACAGGCGTTCATGTTCAGCCGGTAAAATTTGGAACTGTGGATACTGCAGAGCTGTATTTGAAAATGCTAGAGAACTTTCAAGGCATAAAACCGGAGAAGCTAATGACGAAATTTGGCCATGTAATGAATGCAATAATAGCTTTGGGTCTGAATGCGCTTTCGAAATACACAAAGAGACTCATTCCACTTTACTAATGGATAAAAAAAACTTCTCTTGCTTATATTGCCAAAAAACATTCAACCGGAAGGCGCATCTCACTGTACATCTACGAAGtcacacaggggagagaccttacagttgtgacctatgcgataaagcttataagataaaaactgagagagataatcaccgtagaactcattctggcgaaaagccattcaaatgttcgctgtgtgataagacgtttgccaatacagtgagactcagagaacacacaagatttcattctggaaaaaggccttacccctgttccctatgtaatcaatctttcaaaaaagcaaacgctagaaatgttcacatgactatacacactggggaaaaaccttaccagtgtgatatatgcggaatgaatttcagacTCGGCGGTGATATGCGTAAACATAAGAGAACTCAACACGGACAGAAGAAAGCAACGACTAAAAATGATACAAGCTTTGAAATTGATTCTAAAATATCTAATGCTTTATGA
- Protein Sequence
- MEIELTTESDSLSLIEEVVQIKVVPDQYRIVKLDPELEEEEEKLCHVIGEIGSTDEPETITGDIEETENINISDISNFTETLSSLNNDINYPLICRLCATRGNDMINIFGRNKKYKDIIKMIDQCLTIVVKKSDSLPKQACRSCLDRLELCYQFHKTVAEAEKQLLILRGKIINNTKKKENYCQALKLQCDGQRDLTGLDGNQEIIKTVITEEFHNMEKTEEEEDDIDPLDLERISKSEDCSGKELKDSVEIVDQKYENDIILIREKGGEDETSTGQKADCKLIKCRICGKAFQTVRKCYIHSSVHASKNDYPCGICDKTFTNEKECNVHSAEHIESKKYERRVATNVCKECGKRFVTQARLEFHQIYHNSNSKPCYCEKCNKMMASEASLYQHMLSVHKQYKQYCCDICGNQFRAQSQLYAHQRKHKDERPFECTICNKRFYSNDILRRHKKLHLPEKPYQCNQCGKRFDRNNTLTKHLLKHQVEAGGSTICQVCNICKEVFASDVAAEIHLKNCTIITEDNEDNKILKLNLKETYRCEYCERCYTEIEYMKNHRSCHSKPSAYICTVCDTAYATYNQVTAHKTAHKRTSKISAVKDELVIPRYFTCDYCDKSFLHFTKMNIHRRSCSAGKIWNCGYCRAVFENARELSRHKTGEANDEIWPCNECNNSFGSECAFEIHKETHSTLLMDKKNFSCLYCQKTFNRKAHLTVHLRSHTGERPYSCDLCDKAYKIKTERDNHRRTHSGEKPFKCSLCDKTFANTVRLREHTRFHSGKRPYPCSLCNQSFKKANARNVHMTIHTGEKPYQCDICGMNFRLGGDMRKHKRTQHGQKKATTKNDTSFEIDSKISNAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -