Tmes012193.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tenthredo mesomela
Gene Symbol
-
Assembly
GCA_943736035.1
Location
CALSEY010000119.1:1111722-1114876[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.008 1.7 10.6 0.4 2 23 346 367 345 367 0.94
2 12 0.00025 0.051 15.4 0.6 1 23 438 461 438 461 0.96
3 12 2.1e-05 0.0044 18.7 0.6 2 22 494 514 493 514 0.95
4 12 8.3e-08 1.7e-05 26.3 1.1 1 23 527 549 527 549 0.97
5 12 0.00071 0.15 13.9 0.3 3 23 556 576 555 576 0.99
6 12 1.8e-05 0.0038 18.9 2.3 1 23 582 604 582 604 0.97
7 12 7.7e-05 0.016 17.0 0.2 2 22 673 693 672 693 0.95
8 12 2.4e-05 0.0051 18.5 0.5 1 23 706 728 706 728 0.97
9 12 0.0021 0.43 12.5 0.6 1 23 734 756 734 756 0.98
10 12 6.2e-05 0.013 17.3 1.8 1 23 762 784 762 784 0.95
11 12 0.0001 0.021 16.6 0.7 1 23 790 812 790 812 0.99
12 12 0.0029 0.6 12.0 0.1 1 20 818 837 818 839 0.95

Sequence Information

Coding Sequence
ATGGAGTGGAAAAGAAATGACGACATTAGGACACAAAGCGAAATTGAAAACAATATGAAGATAGAACCTGCCATAGAAATATATTCAACTTTGTATGAAAATGGTGAAAAACTAGTCGAGCTAGAATCTGATATAGAAGAAGATTTCTACGCAATAATGGAACCATTGAAACACGAGGATACAGATACAGCTGAACAAAATCCTCATCTATTATCTGGAATTTACAAAACTCCAAAATCAGAAGAGAGCTTCGAATTTTCTAAATTCACATCTGAGTCGCTATGTAGACTGTGTGCAAATCCAAGCGATTCTATGGTCTATATTTTGGACAGAAATGAATCTGGAAATAATATAAAAGATCAGATCGAATACTGTTTTCCTATCAGGGTAAAAAACGGCGATACTCTACCAAAAAAGATTTGCCAATTGTGCCTAGAGAAGTTAGAGCCGTGTTATCAATTTCATAAAACTGTAGCTGAGGCTGAGAAACGATTTCTTATGCTTAATAATGGAGAAGTTAACGAGAAAAGATTGAAAACACTGTCCGCTCTTGACAACGAGTCACAGATTGTTCCCAAAAATCTTGAAGCCACAAACACTGCAATTATTGAAAATGGCACTGTTCCACCAAATGCAAAACTTCAGAATGAGAAGCGTATAACTAGGAGTTCAAGCCGTCAAAATCAGACTGTCTCCAATTCTGGAATGCATCAATCATTACCAGAAAATGATATGGAAGAATCTGGAAGAATCTGTGGGGATACTGCGGTTATTGAAAATGAGGCTGTTCCGCAAAATACGAAGATTCAGAAAGAGAAACGTGGAACGAGAAGTCAAGCTTTGGCAAGAGATGATCTGGAAAAGTCTGGAAGATTTGGAAGATTGCCGTCTGATCCTAAATTCGATTTTCCTCTAATAATCAGTAATCATACAGAATCTGATAGCATGGATGAAGAGACAAGAGATGATGGCAATGATGATATTGTAGCACGTAAAAAGGTGCCTAATGGCCAGGATATTGATGCTAACATAATAAGCTGTCGAATTTGCAATGTAACTTTCAAGACTGCAAAAGAAATCTCTAGACACTCGAGCATTCATGCATCTACAAATTACTACCCCTGCTGTTTGTGTAGTGAAATCTTATTGAATGAAAAAGACTGGTATAAACACGAGGTGAAACATGCAGAAGGTAAAATTTTAAGAAGAAAATTGCAGACCAACGGCCGTAATGAATCTCAAAAGAAATCTCCCAGAAAATTAAAATCAAAGTCTGAAAAACTGAACCAGAAAATTAGCACTGAAAAAAATTTTCAATGCAAAAAATGCGATAAAGCTATGGATTCAAAGAAATCTCTACAACAGCATTTGATCGTTGTACACAAACAGCATAAAAAATCATCTCGAAACTTATGCCAAAAGGTGCCAAGAATCTCTGATCAACTTACTGCTGGTGAACAAAATTCCAGTTTCAGTACGCAATGCAAATTGTGTGGTAAAAAATTCAGCTCCAATTTCTTGCTGGAAATACACCAACAGACTGAGTGCAGTAAAACGCTTGTAAAGAAGGAAAGAAAATTTGCATGCACGTATTGTGGAAAAACATTCTACCAGAAACGCAATCTGACCGTTCATATACAAATACACGAGGTAAAATCACATGGATGTGATATATGCGGTAGAATGTTCAGAACTGAATTGAACAGAGAAGATCACCGTAGAGTACATACTGGTGAAAAACCGTTCAAATGTTCAATGTGTGACAAAACTTACAGTAGAACGACTACGCTAAAAAACCATGTCACCATTCATTGGGGTATCAAGCCACAGATTATTCTTCCAAATCTGAAAACAACAGATACTACAATTATGGAAAATGAGGCTGTTTCACCAAACGTAAAATTTCAGAGAGAAATGCATAGAACGAGGAGTTCAAGCCATAAAAAACAGACTGTATATAAACAGCATAAAACTTCATCTCAGAACGTATGCCAAAGGAAATCAAGATTCAGTACAGAATGCAAAATGTGTGGTGAAAAATTCAGCTCTAATTTCTTGCTGGAAGTACATCAACAGACTGACTGTAGTGAAGCGCTTGTAAAGGACAACAGAAAATTTGCATGCACGTATTGTGGAAGAACATTCGGTCTGAGAGGCAAGCTGAATATTCATCTACAAACACATACGAGAGAATGGTCCTATGAATGTGATATATGCGGTAACTTTTTCAGAACTGAAATAAGCAGAGAATATCACCGTAGAATACACACTAGAAAAAACCCGTACGAATGTACAATGTGTGGAAAAACGTTCAGTAAAACTTCTGTACTAAAAAATCATTTTACTCTTCATTCGGATATTAGGCCTTATAAGTGTTCTCTGTGTCCTGCATCGTTCAGAACACAAACCATGAGAAATATACACCTAAGAATACACACAGGGAAAAGACCGTATGAATGCGACATTTGTGGTACCGATTTTAATAAAAAACTATATCTGGACCGTCATAGGGGAATTAAATTATGCCGAGAGAGAGCGGCTGCTAAAAATCTAAAGTGA
Protein Sequence
MEWKRNDDIRTQSEIENNMKIEPAIEIYSTLYENGEKLVELESDIEEDFYAIMEPLKHEDTDTAEQNPHLLSGIYKTPKSEESFEFSKFTSESLCRLCANPSDSMVYILDRNESGNNIKDQIEYCFPIRVKNGDTLPKKICQLCLEKLEPCYQFHKTVAEAEKRFLMLNNGEVNEKRLKTLSALDNESQIVPKNLEATNTAIIENGTVPPNAKLQNEKRITRSSSRQNQTVSNSGMHQSLPENDMEESGRICGDTAVIENEAVPQNTKIQKEKRGTRSQALARDDLEKSGRFGRLPSDPKFDFPLIISNHTESDSMDEETRDDGNDDIVARKKVPNGQDIDANIISCRICNVTFKTAKEISRHSSIHASTNYYPCCLCSEILLNEKDWYKHEVKHAEGKILRRKLQTNGRNESQKKSPRKLKSKSEKLNQKISTEKNFQCKKCDKAMDSKKSLQQHLIVVHKQHKKSSRNLCQKVPRISDQLTAGEQNSSFSTQCKLCGKKFSSNFLLEIHQQTECSKTLVKKERKFACTYCGKTFYQKRNLTVHIQIHEVKSHGCDICGRMFRTELNREDHRRVHTGEKPFKCSMCDKTYSRTTTLKNHVTIHWGIKPQIILPNLKTTDTTIMENEAVSPNVKFQREMHRTRSSSHKKQTVYKQHKTSSQNVCQRKSRFSTECKMCGEKFSSNFLLEVHQQTDCSEALVKDNRKFACTYCGRTFGLRGKLNIHLQTHTREWSYECDICGNFFRTEISREYHRRIHTRKNPYECTMCGKTFSKTSVLKNHFTLHSDIRPYKCSLCPASFRTQTMRNIHLRIHTGKRPYECDICGTDFNKKLYLDRHRGIKLCRERAAAKNLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-