Tmes014049.1
Basic Information
- Insect
- Tenthredo mesomela
- Gene Symbol
- -
- Assembly
- GCA_943736035.1
- Location
- CALSEY010000145.1:730903-733844[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-09 9.2e-07 29.8 0.0 3 40 22 60 20 64 0.88 2 2 6.3 3e+03 -0.6 0.0 13 22 134 143 132 144 0.89
Sequence Information
- Coding Sequence
- ATGCCCAGGAAGTATACCAGAAAAAATACTGAAATATCCTCTAAGCGAGGACAGTGGTCTGCCGATAATTTACGAGAGGCTATACGAAGAATAAATGCCGATGAGATAGGTATTAACGAGGCCTCAAGATACTATGGTATACCGCAACGAACCCTACGCCGTCGAAGGAGTTCCGGCAATTTTGAAAAGCTACCCCTCGGACCACAAGGTTTATTTGGTCTCGAAAATGAGAAACGTCTCGTAAAGCACATACAGAGACTTGAGTCTTCTGGGTGCGCGCTTGACCGAATGACCGTACGACGCCTTGCGTATCAGTTTGCAGAGAAACTTGGACTGAAACATAAATTCAATGAAGAAACGAAATGTGCAGGGCGCGACTGGATTGTTTCGTTTCTAGAACGAAATAAAGAGTTAAGTATTAGACAAGCCGAGGGATTGTCTTTGGCACGTGGTCAGGGAATGTCCAGAGATGAAGTGAACCAGTTTTTCAAGTTGCTGTCAGAAATCTTCATCaagtatgatttcttcaataaaccggggaacatttataatatggatgaatctggtatgcaactaaataacaaacctggaaaagtagtcgcaaccaaaggagcgaaagtcgtacatgtactaacatcagctgagagaggagaaaatgttacggttattgcatgctgtaacgcagaaggcactttccttcctccagtattagtcatgaagggcaaacgtcaaaagcccgaattctcagatggactacctccaggatcacaagtttacatgaacgaaaaatcgtcgtatattaactcagaactattcatgaaatggttaaaagaacattttctgccgaggaaagcgccaggaaaggtgctgttgattctggatggacatgtgtcccattctaacgcattggagatgcttgaattcgcCGATGCTAGATCTCAATGTCTCAATCGGTTTACCGGATTTGTAAAATATATAGGGATTCTACAGAATATTGAAAATCATGAAAAAGTTCCCATATCATTTGACCTTGACATGCAGCGTTTTGATACCGATATCCGATGTAATGGTATACAATATATCAATACAAAAACATGGGAGGTAGAACTACATGAGAACATCTATTACACGAGATTTAATACTTTCAATGAATAA
- Protein Sequence
- MPRKYTRKNTEISSKRGQWSADNLREAIRRINADEIGINEASRYYGIPQRTLRRRRSSGNFEKLPLGPQGLFGLENEKRLVKHIQRLESSGCALDRMTVRRLAYQFAEKLGLKHKFNEETKCAGRDWIVSFLERNKELSIRQAEGLSLARGQGMSRDEVNQFFKLLSEIFIKYDFFNKPGNIYNMDESGMQLNNKPGKVVATKGAKVVHVLTSAERGENVTVIACCNAEGTFLPPVLVMKGKRQKPEFSDGLPPGSQVYMNEKSSYINSELFMKWLKEHFLPRKAPGKVLLILDGHVSHSNALEMLEFADARSQCLNRFTGFVKYIGILQNIENHEKVPISFDLDMQRFDTDIRCNGIQYINTKTWEVELHENIYYTRFNTFNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -