Tmes038823.1
Basic Information
- Insect
- Tenthredo mesomela
- Gene Symbol
- -
- Assembly
- GCA_943736035.1
- Location
- CALSEY010000943.1:60290-62125[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7e-13 3.4e-10 40.8 0.1 1 43 15 57 15 59 0.91
Sequence Information
- Coding Sequence
- ATGGTTTATAGATACGTTAGAAAAAGTGACCAAGCGAGTTGGTCAGAAGAATCTTTGAGGAGTGCAATCAATGACGTTCGAAACAAAGGgacgtccattaagtctgcgggcaagaaatataatattccgtatacaacactacaacgacacgtcaagtcaggaagcagcaaaaagaagttgggcagattcaccaccgtctttacaagagaacaagaagaagacttgtgcaaatatttgaaggaactggacattttattttttggggtgactcgtctagacttccagaaaatggtgtatgattttgcaacaaaaaataacgtcgagcacccgtttaataatgggcaggctggtgatgaatggtttgctggattcagacaaagacatcctgaaattgtactacgggttccagagcctacgtccatcgcaagggccagaggattcaatcggccacaggtggagcggttttacactattttgtgggatcagatagagcagcacaagtttgacgcgacctcgatttataatatggatgaaacaggagtacgaacatcaagcagcaaaccaccaaaaattttatccactaaaggcaaaaaacaagttggtgtcataagcagcgctgaaagaggacaacttacaactgtcatttgctgctgcaatgctgctgggggatatgttccgccttttttcatatttgctcgaaaacggatgcaagaacgactgctagatggtgcgccgccaggatctcaagctagtgtcactgataacggttggattaacggaccaacgttcctactttggcttaagtttttcgtcgaaaaggtccgccccactaatgaccgtaaaatactgttattactggacaatcacgaatctcataaatactatccagcattggaatatgcatctgctaacaacgtcatttttgtttcctttgcgccacacacaacacacaggatgcaacccctcgatgtcgccgtttatggtcctatcaaaaagtatttcgagcaagagttaagtacattccagaagagtcatcccggaagaataatcaaccaatacgatattgcacaactttttgcaggagcctatgtcaaaggagcttcaattcagaatgctatatcaggattcaagaaaccaggtatttggccgTACGATCGGCATGTATTCGGCGATGACAGTTTTGCTCCAGCAACTATGACTGATCGTCCTCTGATCGCAGAAACTGATAGTCAGGCAGATAATCGAGATGTTGATGAACCAACCGGAGAAGCTGCCTTACCAACTCCGTCTAGGTCTGCTAACGTCTCGAAAGAAGAACTTTATCGctcgccttttgaagtcagaccgatacctcaaatggctgcaccaaaaacaacaaggaaaaacaggagccaaagggctgaagttcttacatcgactaccgttaaaaatgaacagTCGGCAAAATTCATCAAACTGATGGATAAGAAATCAAAGATTGACGAATTAGGTGGCTCCAGAAAACGCGGGCGGCCTAAAGCTGGACAGCCGAAAGCTGGACAACCGACAGCTGGGCAGCCGAAGACTGGGCGGCCAAAAACTGGGCGGCCAAAAACTGGGCAGCCAAAACCTAGTTCGAGTCAGACCGATTCTAGTCCAGTTAATGCGAAAGAACCAAAGAAAACAAACCTAGAGAAAGACAAGGAGAAATACTCCTGCTCAGTTTGCAGTGAAGACTATCTTGAGCCGGTAAAAGAAGACTGGATTCAATGTAGTGAATGTCTGAAATGGGCCCACGAAGCTTGCACATCCTACTTGGGCTGTGGAAGCTTCTTCTGTGACGAATGTGAAGACTAA
- Protein Sequence
- MVYRYVRKSDQASWSEESLRSAINDVRNKGTSIKSAGKKYNIPYTTLQRHVKSGSSKKKLGRFTTVFTREQEEDLCKYLKELDILFFGVTRLDFQKMVYDFATKNNVEHPFNNGQAGDEWFAGFRQRHPEIVLRVPEPTSIARARGFNRPQVERFYTILWDQIEQHKFDATSIYNMDETGVRTSSSKPPKILSTKGKKQVGVISSAERGQLTTVICCCNAAGGYVPPFFIFARKRMQERLLDGAPPGSQASVTDNGWINGPTFLLWLKFFVEKVRPTNDRKILLLLDNHESHKYYPALEYASANNVIFVSFAPHTTHRMQPLDVAVYGPIKKYFEQELSTFQKSHPGRIINQYDIAQLFAGAYVKGASIQNAISGFKKPGIWPYDRHVFGDDSFAPATMTDRPLIAETDSQADNRDVDEPTGEAALPTPSRSANVSKEELYRSPFEVRPIPQMAAPKTTRKNRSQRAEVLTSTTVKNEQSAKFIKLMDKKSKIDELGGSRKRGRPKAGQPKAGQPTAGQPKTGRPKTGRPKTGQPKPSSSQTDSSPVNAKEPKKTNLEKDKEKYSCSVCSEDYLEPVKEDWIQCSECLKWAHEACTSYLGCGSFFCDECED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00939461;
- 90% Identity
- iTF_01413028;
- 80% Identity
- -