Tdis023517.1
Basic Information
- Insect
- Tenthredo distinguenda
- Gene Symbol
- -
- Assembly
- GCA_947538915.1
- Location
- OX384534.1:1905968-1908902[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.6e-05 0.0022 19.1 4.0 1 23 262 284 262 284 0.97 2 12 0.052 7.1 8.1 5.0 2 23 290 311 289 311 0.95 3 12 8.2e-05 0.011 16.9 0.9 2 23 321 342 320 342 0.97 4 12 4.6e-06 0.00063 20.8 8.4 1 23 438 460 438 460 0.98 5 12 0.0015 0.21 12.9 1.1 1 22 465 486 465 489 0.90 6 12 8.2e-06 0.0011 20.0 1.0 1 23 528 551 528 551 0.93 7 12 7.8e-07 0.00011 23.2 1.1 1 23 585 607 585 607 0.98 8 12 0.00017 0.023 15.9 4.0 1 23 621 643 621 643 0.96 9 12 0.00016 0.022 16.0 4.7 1 23 649 671 649 671 0.98 10 12 0.0014 0.19 13.0 3.2 1 23 677 699 677 699 0.98 11 12 4.8e-05 0.0066 17.6 6.5 1 23 705 727 705 727 0.98 12 12 0.00022 0.03 15.5 0.3 1 21 733 753 733 754 0.93
Sequence Information
- Coding Sequence
- ATGGACATTAAAATTGAAGAACGAATCGCTGTTGATAATTTAGAGAATGTTTGTCGGGTTTGTTTATCGTCGGATCAAAATAAAGAATTCATTTTTCGAAATGAAGGTGAGGCTTCAAAAATTGAGGATAAATTCACCCTGTCGCAAAAGCTCCGAGTTTACGGGGGCATAGAGATCTGGGAGGACGATGGACTTCCTACTAAAATTTGCACCATTTGCATTTCTAAAATTAGCGTTGCACACGATTTTCGTGATCAATGTCAAAAGGCGGATGAAAAACTCAGGAAATTATATGGCAAACCTGCCCCTCAAAATGATTCTAAAGGTCAAAAGAATCAGCATTGTCAAACAGATACATCTCTGTTGCCCGTCCGCATCAAGGAAGAAGAAAAAGATATGATGATGCAGCAGCAAAGTATTGCGAATATTGACTCTGGGACGGAGTTGGATAGAGACCAGCAACTTCTTCCTAAAATTTTGTATAAAGATGATATTGAGATTGAAGAGCATAAAATCCTGCCTGACTTCAATGTCGAGCAACATCAGGTAGAGAAAGAAAAAAATTTGGTGAAAAAAGAGGCGTACAGAACAAGGAGGGTTTCAATGTTTAAGAGAATGACTTCTATGGAGAATTTGAAAAGCCATAAAGAAAGACAGAGGCAATATATCAAGAAGAATACAAACTCGAAGTCTGAATCTAGCGAGCAGGATTTATGCATGATTAAAAATACTAGAATAAGATCGAACGGGTCAATTGATTTTAGCTTGGAATCTGAACTCTCCCACAAGTGTAGTAAATGCAACAGATCTTATTCGACGAAAAAGTCGTTGGAAAGACACGCGGCTACTCACGAAGAGAAAAAATTAAAGTGCAATAAATGTAGCAAACAGTTTTTCAGACTTGAGAAATTGATGGAGCATAATAAACATCATGATTCTCAGGACAAGCCTAAGCCAGTATCATGTAAAATATGTGATAAAAACTTTAGGAAAACTGATACTATGGTCAGACATCTGAACATCCATAAAAAGGCTAATCCTAAAGAAGTATTTTCCATTCTAAAAGAAATCAGAGACAGAAGAAAGCTAGAAAATAAAATGGAGAATTGTAGTGTAGATGGGAGGGCAGCTAACAAAGATGAAAAGGCTGAGCTTAGCAAGGAGGAAAGTAGCAGCGGCGAGGAGACTGAGACAAAGGAGATAAGCAAACGTCTTCCAATGACGAATGAAGATCAGGACTACAACCCAGATTCTCCAAACTCAGAATCGCACAGCGAAAGTGAAACCGATTCTTTCAATAACTTAGCATTTTACAGATGTAAACATTGCACAAAATGTTACTCGACTAAAAAGTCCCTGCAAAGACACATGTTGATACACGATGAAAAGAAATTTGTCTGTAACGTTTGCAATATGAAATTTTTCAGACCTGATCGACTAAAAAGTCATAGGGACAGGTACGGGCATGATGAAGACAAAGAATGTACAGAGCCACAGAAGCCACCTGATGATAAATCGGCGATAAAATTGATAAACAGTTGGATAAGAGAAGAGTTGGATTCCGATAATGAAGGGAAAGGATTCCCTTGTGAAACATGCGGGAAATCATATGTGACCAAAAAGTCTCTGCAAAAGCATAAAGCAAACATGCACGAAAGCAGAACAGATTTTTGCGCCACTTGCAAAGCTGATAAATGCAAATGCGCTGAAAAGGCCAGAGACAATGAGAAAAAGATGGAAAAATCTAAGCCATTCAGCTGCGACGAGTGTAACAAGTCATTCGAAAAGGAATCTAAACTGGAAAAACATTTAAGAATTCACGAGCGTGCTAAAGAACAACAAGATTCTAATTTCAAACGATTTTTATGCCATATTTGCAGCAAAACCTTCAGACAAAACACTGGACTCATGTTTCATATGCgaacacatactggctacaaaccacatgtgtgcaaatattgtggccgaggttttacgtcgaattcaaactgcattaatcacgaaagaactcatactggggatcgcccttttgtttgtcatttctgcagtgcggcattcgcaaagtcctgtactctaaaagctcacattacgactcatactggagaagctaactaccattgtaaaacttgcggaaaatcatttaggagattaaagtacttgaaagagcacagatttactcatacaggggaaaagccatacgcctgtaaaatttgtggcacagcttATAGTCATTCTGGTAGTTTATTCGTACATGAAAAGAAGTGCAAGGCTCAGTACAGCAACTATCAGACTGTATCTGGACAAAATATACAAAATTATAGCCAGTCGCAAAACAGCGTCAACACATCTTCAGTTATGGCTCCTATAATCCCTATGTTATCTACTTCGCATCATTTAAGTAACATAAATAATCCTCTGGGAGGTAATGCGAATAAAAGTTACGTTGAAAGTATGCAGCGTATGAGTGCTCATGCGGCTGCTGCAGCGGCAGTCGGTAATCCAGCTTTGCATATGCATCCGAATCCCGATGTTTCAGAAATGGCTTCTGCAGTTAGGAGTTTTGCTATAATAGGACAAATGTTTCACACGTAA
- Protein Sequence
- MDIKIEERIAVDNLENVCRVCLSSDQNKEFIFRNEGEASKIEDKFTLSQKLRVYGGIEIWEDDGLPTKICTICISKISVAHDFRDQCQKADEKLRKLYGKPAPQNDSKGQKNQHCQTDTSLLPVRIKEEEKDMMMQQQSIANIDSGTELDRDQQLLPKILYKDDIEIEEHKILPDFNVEQHQVEKEKNLVKKEAYRTRRVSMFKRMTSMENLKSHKERQRQYIKKNTNSKSESSEQDLCMIKNTRIRSNGSIDFSLESELSHKCSKCNRSYSTKKSLERHAATHEEKKLKCNKCSKQFFRLEKLMEHNKHHDSQDKPKPVSCKICDKNFRKTDTMVRHLNIHKKANPKEVFSILKEIRDRRKLENKMENCSVDGRAANKDEKAELSKEESSSGEETETKEISKRLPMTNEDQDYNPDSPNSESHSESETDSFNNLAFYRCKHCTKCYSTKKSLQRHMLIHDEKKFVCNVCNMKFFRPDRLKSHRDRYGHDEDKECTEPQKPPDDKSAIKLINSWIREELDSDNEGKGFPCETCGKSYVTKKSLQKHKANMHESRTDFCATCKADKCKCAEKARDNEKKMEKSKPFSCDECNKSFEKESKLEKHLRIHERAKEQQDSNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYSNYQTVSGQNIQNYSQSQNSVNTSSVMAPIIPMLSTSHHLSNINNPLGGNANKSYVESMQRMSAHAAAAAAVGNPALHMHPNPDVSEMASAVRSFAIIGQMFHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01414402;
- 90% Identity
- iTF_01411757;
- 80% Identity
- -