Tdis008788.1
Basic Information
- Insect
- Tenthredo distinguenda
- Gene Symbol
- -
- Assembly
- GCA_947538915.1
- Location
- OX384530.1:10775825-10778167[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.001 0.14 13.4 0.1 1 22 116 137 116 139 0.91 2 13 1.3e-06 0.00018 22.5 1.3 1 23 146 168 146 168 0.98 3 13 1.8e-06 0.00025 22.1 6.6 1 23 174 196 174 196 0.98 4 13 0.00013 0.018 16.3 6.1 2 23 213 234 213 234 0.98 5 13 1.7e-08 2.3e-06 28.5 3.1 1 23 239 261 239 261 0.98 6 13 3.8e-07 5.3e-05 24.2 0.8 1 23 266 288 266 288 0.98 7 13 1.3e-08 1.8e-06 28.8 2.5 1 23 294 316 294 316 0.98 8 13 1.7e-05 0.0023 19.0 8.1 1 23 372 394 372 394 0.97 9 13 1.1e-05 0.0015 19.7 0.8 1 23 463 485 463 485 0.98 10 13 1e-05 0.0014 19.7 3.9 2 23 501 522 501 522 0.98 11 13 6e-06 0.00083 20.5 1.3 1 23 527 549 527 549 0.98 12 13 2.7e-05 0.0038 18.4 3.1 1 23 555 577 555 577 0.93 13 13 0.00018 0.025 15.8 5.8 1 23 583 605 583 605 0.97
Sequence Information
- Coding Sequence
- ATGGAACGTGGGGATAATATACTGTTCGACAGCGTCGATGGAATAAGACACATCATAGAAGAGCCTCTAGATAACGACGTTTCGACTCTGAGAGGATTCCTCGACTATGTCGAGACTATAACAACTCAAGAAATTAAAATCGAGCTACAGGGTTCGACGAAAACTAACAACGCCGCTGTTTCCGTTCCTGCAAAGTTTGCTGATATTAATCTAACGAATTTGATGAAGAAGGAATCCCTGGAAAAATCATCGATTCAATACAATGCTTCGCCTGAGCAGCAGGAACTGTTCACCGAGGGTACTGCTGATGTTAATTGGAAGCTAAATGATGGAAATCCGAACCTTTATCGCTGTGCTATTTGTCAAGTTCAATTCTCCAGTCGAGTTTCTCTGGATAGACACATCGTGGACTTACATCTGGGTACAACGGGTCGTTTCCAGTGCGATATTTGCCATAAAGAATTTTCTCGAGTCTCTGACTTGGCTAGACACAAGCTAATACATTCAGGCGTTAAACCATTCCAATGTAACACTTGCCATAAGCAATTTTCTAGACAAGATCACCTCAAGCAGCACATACTTAGCCATTCGCAATGCTCTGATAGCGAGCTATTCGCGTTTGAGAATGGTTTGAATCGGTGTACTATTTGCCATAAGCAATTATCACGGCCTCAACACTTGAGAACTCACATGCGACAACATTTGGGGACTTTGTTTGAGTGCGATAAATGCAACAAGAGATTTTCACGAGCTTCGCACCTCAGAGCTCACATGCGTCTTCACTTGGGTACATGTTTTCGCTGTGATATTTGCCAAAAAGAATTTTCTAGACCTTCTGATTTGGACAGACATAAGCTTACCCATTTAGACAAGAAATTATTCGAGTGTCCTACTTGCCAGAAGAAATTTTCTAGAAAGGATAATCTGAAAAAGCACATGCTTTCTCATGTGGAATCCATACCACCGAACCAAATTAGCCATCGTGAGAATCACTTCGAGGAAGATCTGTGTTTGAATTCAAAGAAAAATTGCCAATGCAGTATTTGCGTAGCGAAAATTTCTTTACCTATGGAATTTGAAGGGCATACGATTATTCACTCTGATATAAGATGCCACGAATGTCACGTTTGCAAGAAATATTTCACTAGAAAAGATCATTTAAAGAGACACCTGGCTTCGCACAAGATCTCACCTCGCGATCAGTCGGTTGATCAATGCATTGCAAGTAGGAGAACCAAGCAGCAAATGCTTTTAAATGTAGTTCCAGTTTCAAACTCATTTGATTCTAGAGAAAAATCCGACGGTCACGGTGCCTGCAAAGTAGAGTTTGGTACTAGGTTTAATTACGATAAAAGCATGTGCCCCCATGATTGGATAGAGAAGAAATTCGAATGTGCGATTTGTGAGAAGCGATTCAATAGAAAAGTTAGATTAAAAGAACACGTTCGTATGCATGGAGTCGGTAATTTTGAGCTTAACGATGGGGATAAGGATCAAAACAGATGTAATATTTGTCACAAACAATTGTCACGCCCAGAGCATTTAAAGGCACACATGCGACTGCATCTGGGAACACTTTTTAAGTGCGAAACTTGCCAAAAAGAATTTTCAAGATTGTCAGACTTGGACAGACACAAGCTGGTCCATTCAGGGCTTAAACAATTTATATGTATTATTTGCCACAAGCAATTCTCGCGGAAAGATTACCTAAAGAATCACATGCTTTCACATGCTAATCAAAAATCATTTGAATGCGACAAGTGCAAAAAGCGCTTCACCTATTTCACCAATTTAAGAAATCACTTGCATCTTCATATAGGAGATTAA
- Protein Sequence
- MERGDNILFDSVDGIRHIIEEPLDNDVSTLRGFLDYVETITTQEIKIELQGSTKTNNAAVSVPAKFADINLTNLMKKESLEKSSIQYNASPEQQELFTEGTADVNWKLNDGNPNLYRCAICQVQFSSRVSLDRHIVDLHLGTTGRFQCDICHKEFSRVSDLARHKLIHSGVKPFQCNTCHKQFSRQDHLKQHILSHSQCSDSELFAFENGLNRCTICHKQLSRPQHLRTHMRQHLGTLFECDKCNKRFSRASHLRAHMRLHLGTCFRCDICQKEFSRPSDLDRHKLTHLDKKLFECPTCQKKFSRKDNLKKHMLSHVESIPPNQISHRENHFEEDLCLNSKKNCQCSICVAKISLPMEFEGHTIIHSDIRCHECHVCKKYFTRKDHLKRHLASHKISPRDQSVDQCIASRRTKQQMLLNVVPVSNSFDSREKSDGHGACKVEFGTRFNYDKSMCPHDWIEKKFECAICEKRFNRKVRLKEHVRMHGVGNFELNDGDKDQNRCNICHKQLSRPEHLKAHMRLHLGTLFKCETCQKEFSRLSDLDRHKLVHSGLKQFICIICHKQFSRKDYLKNHMLSHANQKSFECDKCKKRFTYFTNLRNHLHLHIGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00060529;
- 90% Identity
- iTF_01412510;
- 80% Identity
- iTF_01412510;