Tamo006479.1
Basic Information
- Insect
- Tenthredo amoena
- Gene Symbol
- -
- Assembly
- GCA_963966615.1
- Location
- OZ016484.1:4677860-4686944[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.021 2.2 9.4 3.1 1 20 98 117 98 119 0.95 2 11 0.008 0.85 10.7 1.8 1 19 161 179 161 181 0.95 3 11 0.015 1.6 9.9 0.3 1 23 190 213 190 213 0.96 4 11 5.1e-05 0.0054 17.7 0.6 1 21 257 277 257 278 0.96 5 11 0.00088 0.093 13.8 3.3 1 21 324 344 324 345 0.95 6 11 2.2e-05 0.0023 18.8 2.7 1 21 370 390 370 391 0.96 7 11 5.4e-05 0.0057 17.6 3.6 1 21 419 439 419 440 0.94 8 11 0.0025 0.27 12.3 0.1 1 21 448 468 448 469 0.95 9 11 0.0025 0.27 12.3 2.0 1 19 499 517 499 519 0.97 10 11 1.6e-06 0.00017 22.4 0.2 1 21 555 575 555 576 0.96 11 11 0.00014 0.015 16.3 0.7 1 23 585 608 585 608 0.97
Sequence Information
- Coding Sequence
- ATGCGGATCTGCATTCTCTCGACAACCGGATCTGATCCAACATATTACCAGCTTCTCCGAGGATATGCAGATATTAATAACGACATAACTACGGATCTATCTTTGAACAAATCAAACCCATTTCTGACGTCTTTTCAACACTATCTGCAAATTGAATCTGACAAAACTATTGCTACGCAAGGAAATTGGTTTTCCACTCTAAATATTGGTAGTCTATCTGCGACGGAATCTGATCCACTTGGCAGTATTAATTGCTTGATACCAGACAGTCATCAGGAtccacaaaaaaaatttgtctgtCCCAAATGCAGTCACAGCTACAAGTACCTAGCAGACATGAGGAAACACTATCATTTTCAATGTGGGCAGGATCCTAGATTCAAGTGCCCTTACTGTGCGGCTTGTGAAGAAGAATTTTCTCAAGTCTCTCCATCGCAGCAAATCCCAAACTACCGGCGTGCATCTGATAGCAAAAAACCATTCCACTGTCCAACCTGCAATCAAGGCTTTTCCACACGAAAGACTTGGAGCAGACATTCGACCTTTCAGTGTGGCAAACCGCCACGGTTTCAGTGTCCGTATTGCAGTAATAAAGCTAAACGACCATGGAATATTTACATGCACATACGTGCAAGACATCCTGGCGATTCAGTCTATTATGTTATAGGACCCGTCTATTACCTCAAGAGGCCCTACAATCAGAGAAGGGATGAAACGTACAGAAACGAGGGCATTCCTACAGCCATACCTCTGACGCACAACATGAGATTCCCTTGTCCGAATTGTACCAGCGTTTTCAATCGAAGAAACAATCTACAAAAGCATATTAAATTCGAGTGCGGACAGTTGCCTAGATTCAGTTGTCCCTACTATATCAAGCGTACTGTTGCCTCCAATCGGGCCAGACTCCACCACCGACATTTGGATCAGAAAATCTCTTTGATATCAGGAGCTGAAAACAGTGGTGGTTTTCCGTGCCATAATTGCAGTAGTGTTTTTAATCGAAAATGCAATCTGACCACTCATATTAAACTCGAATGCGgTCTTCACACAGCTTTTCCAATCGGCCGATCTTCAATTTTAGTTCAACTACCAAACCAAATGACATTTCCATGCCCACATTGCCCAAGCGTCTTCAACAGGAAGACAAATTTGTGCAAACATTTACGCTACGAATGTGATTTCCCGCCAGCTCTAGATTCTGAAATGCTGATGGTCAAAAAGTGGAACTATAGAAACTCCTATCATGAAAGACATTATTGTCCTAAATGTGGACGAAGCTATTCGCGTAAAGATCATATGAAGGAACACTATAAATATGAGTGTGGAAGACCGCCCAGATATCAATGCCCTTACTGTCCCAGTGTTAGCAAACAGCCAGGAAATATGTACAAGCACGTTCAATCACCTTCGTTCAGCATACTCTGGGTTCCGAGTATAGATGGAAAGAAGGGTAGAGAAGTATTCGAAGATAGCGAAGAGCTGGCTGTTAGGTTTCAATGTCCAAAGTGTGAAAGGACTTATAATCGTCTCGACAACATGAAATATCACTGTAAACATGAGTGTGGAAAGTCGCCGAGATTTGAATGCCCGTATTGCGcCTTCTTGCCTGGATGCACGGAGTACAAATCTAAAATGGCAGCTAAAGGTGATAGACACAGATATCCTTGTCCTAATTGTGGAAAAAGTTATACAACTAAAAGTGCAATGACTGCACACTACAGATATGAATGCAGTGGAACACAACCGAGATTTGAGTGTGTATATTGTGGGAAATTGAGCAGGAGAAAGTTTAACGTTAAGGCTCACATAAGACAAGTACATCCAAAACAAGCTCAGATATTTAACGTGTTGTACTGA
- Protein Sequence
- MRICILSTTGSDPTYYQLLRGYADINNDITTDLSLNKSNPFLTSFQHYLQIESDKTIATQGNWFSTLNIGSLSATESDPLGSINCLIPDSHQDPQKKFVCPKCSHSYKYLADMRKHYHFQCGQDPRFKCPYCAACEEEFSQVSPSQQIPNYRRASDSKKPFHCPTCNQGFSTRKTWSRHSTFQCGKPPRFQCPYCSNKAKRPWNIYMHIRARHPGDSVYYVIGPVYYLKRPYNQRRDETYRNEGIPTAIPLTHNMRFPCPNCTSVFNRRNNLQKHIKFECGQLPRFSCPYYIKRTVASNRARLHHRHLDQKISLISGAENSGGFPCHNCSSVFNRKCNLTTHIKLECGLHTAFPIGRSSILVQLPNQMTFPCPHCPSVFNRKTNLCKHLRYECDFPPALDSEMLMVKKWNYRNSYHERHYCPKCGRSYSRKDHMKEHYKYECGRPPRYQCPYCPSVSKQPGNMYKHVQSPSFSILWVPSIDGKKGREVFEDSEELAVRFQCPKCERTYNRLDNMKYHCKHECGKSPRFECPYCAFLPGCTEYKSKMAAKGDRHRYPCPNCGKSYTTKSAMTAHYRYECSGTQPRFECVYCGKLSRRKFNVKAHIRQVHPKQAQIFNVLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -