Tamo008846.1
Basic Information
- Insect
- Tenthredo amoena
- Gene Symbol
- -
- Assembly
- GCA_963966615.1
- Location
- OZ016485.1:5748837-5751257[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.011 1.2 10.3 0.9 1 23 236 259 236 259 0.96 2 10 0.00074 0.079 14.0 0.2 2 23 274 295 273 295 0.95 3 10 0.002 0.21 12.7 6.5 1 23 430 452 430 452 0.97 4 10 0.00031 0.033 15.2 0.8 1 23 458 480 458 480 0.97 5 10 1.3e-05 0.0014 19.5 0.2 1 23 486 508 486 508 0.94 6 10 0.00033 0.034 15.1 2.7 2 23 514 535 513 535 0.97 7 10 6.3e-07 6.7e-05 23.7 0.3 1 23 541 563 541 563 0.98 8 10 0.0012 0.13 13.3 2.1 1 23 569 591 569 591 0.98 9 10 0.00022 0.024 15.6 3.1 1 23 597 619 597 619 0.98 10 10 1.1e-05 0.0012 19.8 0.3 1 23 625 647 625 647 0.98
Sequence Information
- Coding Sequence
- ATGGCGACGAGAGAAACGTTCCATCGAAAATTTAGTGAAATATGCCGACTTTGTTTGAAACAGGATGGAGTTATGGCATCTATTTTCCAAAGCGTCGATACAGAAGACGGAGAATTTTCACTTGCTCAAAGAATATCAACGATCGCACGTGTGCAGGTTGACGAAGAAGATGGACTACCTTCTCTCATCTGTCACCTATGCCGTCACCAAGTGGAAAAGTCTtacaattttcgtctcctgGTCGAAATCTCTGATCGCACATTACGAAACTGTTTGGAAAGTGCCCAAGCCGAGGGAACGTCCGATGatcagataataataaaacaagaacACTTAGATAAGAGTATAGAATTAACAGACGAGGAAAATATTGATTTGGAGCAATTTTTGTTACAAAATAATCTGCAGGATTCTGACATAGATCCATCAGCTATTAATGTTATTTTAGTTCAGTCAGAAGACGGCACTCAAGTACTAAACATTTCCAGTATAGATGAAGCTCGGAGTAGCGAAAACTTAGAAGCTGCAGTAAATATTAAAAGCGAGTATTCACTAAACACTGAGAAAGCATACGACCCAATAGCGTCGGATGTTTGCGATAAAGATGAAAGCACCTCAGAGTTAGATGACTTGGAAGGTATCAGGCAGTTGTTGAGTTCTGAAAAGATATATGTCGAAGCTTTAGAATCTCAGATTCAGACTGTTCACACTTGTAGCGAATGCGAGGAAATGTTTTTAACAGAGgatgaattgaataatcatttttctaccGAGCATGGGGAAGATAGAGAAGAGATTGATGCTTACGACACAGATATAAGCTGCCAATTGTGCTTTGAGCCGTTCAAATCTTTGTCAGAATTGAAAGATCATATCACTGAACACTTTGCCCAACATAAAAGCTTAGATAGCATTAAATCAGAGACACATATCGAcagaatagaagaagaagaagtagaagctTATGATACTGTAGATAAAATTCTTGATGATAATTACCAATATGTATTAGAGGTATCAAAGAGTGATGGAAATTATTCGGAAACAGTAACTGAGAGTAATTTAGCCGATGATATGATTGGTGACGGTGTggagaatgaaataattgaaatcgatACCAATAACACTAGTGAAACCAGCCCTACAGTCAGATATGAGAAAGACAGTGGTTCTGTAGATCTGGAATTGAATTTAGAGGTAGCTAACGACATGGAGTATAAgtctgatattttttattgcgtAAAAGAGTATTTGTCTGACCGTATTAAGCCACGACCGGTAGGGAATTTTGCTTGTACTCAGTGCGATAAAACTTTTACCCAAAAACATGAGCATACTCTGCATCTCAGGAGACATATGGGCATAAAACCTTTCAAGTGTACATTTTGCGATAAGGCATTCATAACTAATGCATTAAGAAAAGAACACGAGAGAGGTCACACAGGTGACAAAGCTTTTGTATGTGTTGTTTGTGGTAAaagttttgttaaaaaatctgaattaaaaTATCACGAAGGTATTCATACTGACACTCCGTCCACTTGCACTATTTGCAATAAAGAATTCACAAATGTTCAATCATTCAAAATGCACACTAAACGGCATGTTTTAGGGAGTAGATACATCTGCGAAACTTGCGGTAAAAGTTATTACACTAATTCGGAACTGGCTAGACACGTACAGATGCATTCTGGTAAACGAGAATATCCTTGTCACTTGTGTCAAACCTCGTTTCTTTCGCGTCCAGAGTTGAATAGACACTTGAAATATCacattggagaaaaaaaattccgatgTAAAATCTGCTTCAAGTCTTACTTCGAGTCAGGTCACTTGAAAATACACGAAAGAGTGCACACTGGTGAAAAACCTTACATTTGTACAGTTTGTAATAAGGCTTTTGTTACTAAACCAAAGTTAGTTAGGCACGAAAAAATTCATGCCAAGGAGAGTATTGGGAACTCCGCTATCGCCGATAATCAGCATCAGATTGAAACTGTTAAAGTggaaacaatattataa
- Protein Sequence
- MATRETFHRKFSEICRLCLKQDGVMASIFQSVDTEDGEFSLAQRISTIARVQVDEEDGLPSLICHLCRHQVEKSYNFRLLVEISDRTLRNCLESAQAEGTSDDQIIIKQEHLDKSIELTDEENIDLEQFLLQNNLQDSDIDPSAINVILVQSEDGTQVLNISSIDEARSSENLEAAVNIKSEYSLNTEKAYDPIASDVCDKDESTSELDDLEGIRQLLSSEKIYVEALESQIQTVHTCSECEEMFLTEDELNNHFSTEHGEDREEIDAYDTDISCQLCFEPFKSLSELKDHITEHFAQHKSLDSIKSETHIDRIEEEEVEAYDTVDKILDDNYQYVLEVSKSDGNYSETVTESNLADDMIGDGVENEIIEIDTNNTSETSPTVRYEKDSGSVDLELNLEVANDMEYKSDIFYCVKEYLSDRIKPRPVGNFACTQCDKTFTQKHEHTLHLRRHMGIKPFKCTFCDKAFITNALRKEHERGHTGDKAFVCVVCGKSFVKKSELKYHEGIHTDTPSTCTICNKEFTNVQSFKMHTKRHVLGSRYICETCGKSYYTNSELARHVQMHSGKREYPCHLCQTSFLSRPELNRHLKYHIGEKKFRCKICFKSYFESGHLKIHERVHTGEKPYICTVCNKAFVTKPKLVRHEKIHAKESIGNSAIADNQHQIETVKVETIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01412581; iTF_00939852; iTF_00938997; iTF_01303679; iTF_01413644;
- 90% Identity
- iTF_01412581; iTF_01413644; iTF_01303679;
- 80% Identity
- -