Tamo011730.1
Basic Information
- Insect
- Tenthredo amoena
- Gene Symbol
- -
- Assembly
- GCA_963966615.1
- Location
- OZ016487.1:1317809-1318326[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.4e-07 0.00048 20.3 0.1 2 41 10 49 9 53 0.84 2 2 0.35 2.3e+02 2.2 0.1 32 42 102 113 99 115 0.84
Sequence Information
- Coding Sequence
- ATGCCTCCTAAACGAGCATTATGGTCAGAAAACGACCTGTTGTCAGCTGTCCGAGCAGTGCAAAGAGGAACTTTGAGTTCATATGAAGCTGCAGAAAAGTACAGGGTTATCAGAAGAACTATAAGAAACTATCGTCAGAGTGGCAGTATGTTAAAGCCGTGGGCCTTATTATCCTGCCATAGTAAAATAAGGCCTACTGGCAaggtttttgaaaatgttcaattttgtttttatttatggTTCAAGTTACCATTCTTTGGTTATATTTTATGGAAACTGCCTTATTACCCGCAGGTACCTTACACGCTACACAAAAGATACAATAAACGGAAAATCCAGCGAGACCTCGTGGCTTTACAAACAGATAGAGCAAGGAAACCTTACCTTAACGAAGACGTTGGTTCGTCACACACACTCAACTTCAACACTATACTTTAA
- Protein Sequence
- MPPKRALWSENDLLSAVRAVQRGTLSSYEAAEKYRVIRRTIRNYRQSGSMLKPWALLSCHSKIRPTGKVFENVQFCFYLWFKLPFFGYILWKLPYYPQVPYTLHKRYNKRKIQRDLVALQTDRARKPYLNEDVGSSHTLNFNTIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -