Tamo018903.1
Basic Information
- Insect
- Tenthredo amoena
- Gene Symbol
- -
- Assembly
- GCA_963966615.1
- Location
- OZ016493.1:1219933-1220913[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.1e-09 5.9e-06 26.4 0.0 4 38 17 51 16 54 0.92
Sequence Information
- Coding Sequence
- ATGCCACGAAAGTACCAAAGAAAGACCGAGACCAAATACAAATTAGCAGACTTAGAAAGAGCCCTTCAGGATGTCAAAGACAAAACACTGTCATTAGGAAAAGCAGCTACCACTTATTCTGTTCCAAAAAGTACTATACACGACTTTCTCAAAAAAGATGTTATAACTGATCCAAAAACTGGACGAAAGGCTATATTTACTGAGGAACAAGAAAGGGAATTACAAGAACATATCATGAAATGCAGTAAACTATTTTATGGTTTAACCATAGAGATGGTGCGGAAAATAGCTTTCAAATTTGCTGAAGTAAATAATTTGAAGCATAATTTCAACAAAACATCCCAAATGGCAGGAAAAGAATGGTTCTACGGATTCAAAAAAAGGCATCCTAACATTTCGCTACGTAAGCCCGAGGCCACTTCTATCAATAGAATAACAGCTTTTAATGAAACGGAagtgaaaatgtttttcaacaacTTGGAAGCCTTGCAAGCAAAACATCACTTTGATGCTAATCATATTTACAATATTGACGAGACAGGCATTTCCAATGTCCAAAGAAATTCAAGGATTTTAGCACCAAAAGGCCAGAAACAAGTCGGCATGGCAACAAGTGGTGAAAGAGGCACTACAACAACAGTTGTTTGCGCAATGAGTGCTTCAGGAAAGTATGTTCctccgttttttatttttaagaggAAGCGAATGAATGCTCAACTATTGCGAGGAAGCAATGCTGATATGATAGCAGCAGTTAGCGATTCGGGTTGGATTAACGAGAACCTATTCGTAGATTGGTTACATCACTTCATCTGCTATGCTAAGCCAACTGTTGAAAAACCACTTCTCCTTATTCTAGACAATCATGAAAGTCATGTTAGCCTTGCTTGCTATCTGCTTTGTCGCCAGAatggaataatattattgtcCCTTCCACCCCATACATCACATATTCACATCGTATGCAACCACTGGACTTAA
- Protein Sequence
- MPRKYQRKTETKYKLADLERALQDVKDKTLSLGKAATTYSVPKSTIHDFLKKDVITDPKTGRKAIFTEEQERELQEHIMKCSKLFYGLTIEMVRKIAFKFAEVNNLKHNFNKTSQMAGKEWFYGFKKRHPNISLRKPEATSINRITAFNETEVKMFFNNLEALQAKHHFDANHIYNIDETGISNVQRNSRILAPKGQKQVGMATSGERGTTTTVVCAMSASGKYVPPFFIFKRKRMNAQLLRGSNADMIAAVSDSGWINENLFVDWLHHFICYAKPTVEKPLLLILDNHESHVSLACYLLCRQNGIILLSLPPHTSHIHIVCNHWT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01411418; iTF_00710946; iTF_01034480; iTF_01034522; iTF_01341107; iTF_01157623;
- 90% Identity
- iTF_01411418;
- 80% Identity
- -