Tsin088974.1
Basic Information
- Insect
- Tenodera sinensis
- Gene Symbol
- -
- Assembly
- GCA_030765045.1
- Location
- JAUKNM010000141.1:460835-465109[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.045 18 8.3 6.6 2 23 311 333 311 333 0.91 2 13 0.0038 1.5 11.7 5.7 2 23 404 426 404 426 0.96 3 13 7.2 2.9e+03 1.3 7.6 3 23 564 585 563 585 0.95 4 13 0.0041 1.6 11.6 0.3 2 23 643 665 643 665 0.92 5 13 0.11 44 7.0 0.9 3 23 753 774 751 774 0.95 6 13 0.00043 0.17 14.6 1.1 2 23 806 828 805 828 0.93 7 13 0.0094 3.7 10.4 3.6 2 23 880 902 879 902 0.96 8 13 0.02 8 9.4 2.0 3 23 917 938 915 938 0.94 9 13 0.00034 0.13 15.0 1.2 2 23 988 1010 988 1010 0.94 10 13 0.77 3e+02 4.4 1.7 1 23 1109 1131 1109 1131 0.97 11 13 0.0012 0.47 13.3 1.6 2 23 1147 1168 1146 1168 0.97 12 13 0.34 1.3e+02 5.5 2.5 1 21 1234 1254 1234 1257 0.79 13 13 0.09 36 7.3 2.5 1 23 1284 1307 1284 1307 0.97
Sequence Information
- Coding Sequence
- ATGGCAACCACAGTGATGGAATCAACAACTACATCCACTGTAACTACCATGGCAGGGGATCTCAACATCAGCGATGGAGACGACTCCTCAACTTCCTTTGGAGGAGAGGAATTCGAGGCCGAGCAACCTGAAGACCCTGGATTCGAAAAGACTTCACAGAACCAATCAGAAGTAATGGCAGCGTGCAGCAAGCGTCCTCTGGCTTCCGAAACAGAACGGGATTTTAATCAGGCAAAGAAAAGGCGGAAACAATCAAATCCTGTGAGACTGTCGCCACTTGCCGGTCCCTGCAACAAGGAAAGTGACGAGGAAGGGGAAATTATCAAAGAAGGTAAGGACGTGCATGATAAAGTGTCTAGGTGTGAGTTAGTGGCCAGCGACAGCCGCGATGGAAGATGTGAATTAGAGGACCCAACAGAGCCTATTCGCAGGCTGGATACTGAATCTGGGCAGGAATCTCCTTCTCACTGCCCTTACTGTCCAGACTTTCTCGATTACAAAGAGCGTCTAAAATTTCACATCGATAATGGTCATGTACAAAAACTTTTTCAAAGTCAGCTCCGAAGTAAAATTGGCCTAGAATCGCTACTGACCACCAAAAGTGATGTTCCACTAAATCTTTCCCATTTAAGCGCTTCTGATACGGGATATTCCTTAGATATCGTAGGAACACTCATATCCGATTTTCAAGGTAAGGAGGACGACTCTATGCAAGGGACCAAACCACTCTCGCTTGCAACCAAGTCTCAACATATAGGGTCATTTACTGAAGGAAACCTTGTTTTGCCATCTTATGTTCCAGTTGCTCCACCATATCTATTTTCCTTGATGTCTCAAACACCTGGAAATAGCACTGCATCCTCGCTGAATCAAGTAACAGCCCAAGCTACAGGCAGCACTACTCAAGTTAGAATATTTAACCCCGACGCATACTGCGAACTGTGCCATAAAGAGTTTTGTAATAAATACTTCCTAAAAACCCACAAAGCTAATAAACACGGAATTTACGCAGATAGTGTTACTAATGGACAGAATGGAGGTATATCAACGTCTGTATATATGTCGAGTTTGGCGTCGTCCAACGTTAACTCTCCTCTGTTACCATCCTCTGTGATGGACACACAAAACATCAAAGCCGTTGTTGGTATTTCAAGAATTCATGATACCACAAACGCATCAAAGGTTATGGGGACTACCGTCATGAAGGCAACCTGCGATATATGCAACAAGAAGTTCTGTAATAAATACTTTGTCCGAAGACATAAAATGAAGATGCATGGTATCGTGGACGAGTCTTCAGTAACTGGTAACGTGTCGTTCATAACTCTACCTGAATGCATGCGGAAACAGGAAAATGATGAACGTGGTAGTACATCTGCAGGTTCAGATACCGGATCGAACGCACAGGAAACCATCTCCAACGATGTTCCAACAAATAATGAACCCGATGATCTACGAGTAATAGTGCTTCAAGAAGGAACAAATCAAGCCACTAAGTTGAGTCCAACAAACATACCCGTGGATAATTTCATTGAACCCACGATAGTTAAGGAAGAACCACAACAGGAAGATAGAACTGTGGAAGAAGGCATTGACAGAACTACCGCACCATCGAATACGGGAATGAAAGAAACAGCCTTGGCTTCAGACAGATTGCGCCGTTTGGGCGTAATTAATGCGGATGCATTTTGTGAAATATGTTGCAAAGAATactgcaataaatatttcttacgtACGCACAAAATGAAACGGCATGGCATTGTCTTCAGCGATGAGGGAAAGGAAATGAAAGTCAGTGGAGCCCACAGTATTACCTGGAGCCACATTCAAACCAGTCCGTTGAACTTAATTGTGGGTGAACAAGGCGCTAACAGCTCGGATTCTGCTGAAAAGGTAAAAACTGATGTGTCTGATGGTGACGAACCTGAATGTGATGTTTGCGGCCGAAGATTTCAAAGTTCCTACCTTATGCAAATGCACAGAGCATACTTACATTCGGAGAAAGCAGAATTGAAGAATTTGGACCAAAATGCTTCAAATGGATtggaaaataatataaatgataCTGAAAAAGATGAATTCACCGAGGATTATGCCCTACACAACAATGACGCAATCGGAACGGACGTTAAATCACACGGTAACAGCAGCAAAGAAAATGGTGATGCCTGTAAAGATGCCATAAGTGAGGACTTGCAAAAGCTGCAGACAATGATATTACAATTAAACAATTTGAACGTTGGGAAAGCTACAATATGTACTGTTTGTAATAAAGAGGAAGAGAATCATTTTAGTTTAAGGGCTCATATGATGAGTGAACACGGTATCATGATGGAAGAAACAAACTTTCCCGACATGGATAGAATTTCTGATCAAAAAATGACACAAATTGCTCCAACTTGCGATATTGCTACATATTGCTTTATATGCAAGAAGGATTTCTATTCTAAAGCTCAGTTGAAACAGCATATAGAGGAATTTCATTCATATATGACCCTGTCCTCTGCTACATCCGTGTCGCTGATCAGTGAAGTGAAAGAAGAATTTGAAGCACGAACTCCCTCAGAAAAGCCTGCACAACAAACTTCATCTGTCGCTGCACACGAGAAAAGAATCTCTCTTACACCTACAAATAGCTATTGTGAAATATGTAACAAAGAGCTGTGTAATAAATATTTCATGAAGACTCACATGCAACGGATGCATGGTATTGAAATAGAGAATGGTGCGCAAATAGGCGGCGTGatttgtgatatttgtaacaaggaGTTATGTAGcaaatattttcttcgtgttcaCAAGCAAAACACCCATGGAATTGCAGAGGAGGGTTCTGTTTCTCAGTCATATTCAAGAGACGCCTCTAATGGCCATAGTGTGCAGAATTTAAATGAAAACGATCAAACGCTGAAACCTGAACTGAGCGAACAAAGTCAACGCTACTTTACGCATTTTACAGAAGTGTGCACCATTTGTAATAGACGATTCAGGAGTACGAAATGGTTAAAATCTCATCTCTTGAATGACCATGGAGAATCTGGAATGGAAAAATGGAAGGAGTTAGATTGCCAGTATAAGATGTCTCAACAAGGAAAACAGCAGCATAACATCAGAGTTACAGTATCATCCAATAATCATACAGCGGGAGGGCAAATGGTGACCTATACTTCTGCATTGAAAATTCCCAGTAACTGGCACGGAAGTGAAACAGATGGCAACTGCCTTCGTGGAAGTGAACAGGCCATCTTGAGTCATTCAAACGAGGTCGAAGGCAGCAGAACGTTCACCAATTTATTTGGTGCTCCGGAAACTACAATGAAAAGTtatcattgttcttattgttcCTTCTCCACCCCAGTGCTTGCCTTCCTTTTTGTACACGAGAAATCACACGTGGGACTTTCATCTCAACCTGTACCAGATACTGCAAAAACACTAAAATGCCCAATATGCCTTCAATGCTTTGTACAGGCCGAAGTATTTCAACATCATATTCTAACGCACCAGTTTTCTGGTATGTTCAATCCTTTCTTTAGTTCGGTGCCAGTGACGCCATTCCCGACGCACACTGGGAATATACACGAAAAATTAAAGCCCTCCCCCGAAACGAGAGAAGAAGGACGGATTAAAGGCGAGGATAAATATAATCAAGTTCCATATATAGTCACTGAGGAGGACTGCGATGGGGGAAAGTATATATTTCAATGTTCCAAATGTTCTCAGCGATTTAGAACCAGAGAAGTTTGTTTGAGCCACATTGAAAATGTGCATAATGTAAACATTTCCTCACAGAGTACATCGTCCTGCTCAATTGAAACAATTCCAATGAAATTAACCTCTCAAGAGCTTTACAAGTGTACGCGTTGTGAGTTTTCATCGGTGCACACGTTGGCTTTGAGGAAGCATATCAAGCAGGAACATAGAACGAAGATTTCTCGTCCAGAAGCTTGTCATGATAATCGCGATGTGACGTCTGTAGATGTTTCAACTCTCTCCGAAGAATCTGGCACTGAGGAGGTGAAGAAGAAACTACAAGAGGCAGCCATGAAGTCCCAAGTGCCAGCTTCGTACGCCGTCCCGCAAAACCACATTCCAACTTTAGATGAATTTATCATGCAACCATTTCTGTTAGAAGAGCCAGATGATCGTATAACTTCGGAACAAGACTCTCAACTCCATTTTGATAGAAAATTTGTTCCTTCCCTCGTTTTCCTACCTGTCAAGGAGAAGTTGTCTGGGCCTTTAACAGTTTCCTTTACATTGACACCAGCTTAG
- Protein Sequence
- MATTVMESTTTSTVTTMAGDLNISDGDDSSTSFGGEEFEAEQPEDPGFEKTSQNQSEVMAACSKRPLASETERDFNQAKKRRKQSNPVRLSPLAGPCNKESDEEGEIIKEGKDVHDKVSRCELVASDSRDGRCELEDPTEPIRRLDTESGQESPSHCPYCPDFLDYKERLKFHIDNGHVQKLFQSQLRSKIGLESLLTTKSDVPLNLSHLSASDTGYSLDIVGTLISDFQGKEDDSMQGTKPLSLATKSQHIGSFTEGNLVLPSYVPVAPPYLFSLMSQTPGNSTASSLNQVTAQATGSTTQVRIFNPDAYCELCHKEFCNKYFLKTHKANKHGIYADSVTNGQNGGISTSVYMSSLASSNVNSPLLPSSVMDTQNIKAVVGISRIHDTTNASKVMGTTVMKATCDICNKKFCNKYFVRRHKMKMHGIVDESSVTGNVSFITLPECMRKQENDERGSTSAGSDTGSNAQETISNDVPTNNEPDDLRVIVLQEGTNQATKLSPTNIPVDNFIEPTIVKEEPQQEDRTVEEGIDRTTAPSNTGMKETALASDRLRRLGVINADAFCEICCKEYCNKYFLRTHKMKRHGIVFSDEGKEMKVSGAHSITWSHIQTSPLNLIVGEQGANSSDSAEKVKTDVSDGDEPECDVCGRRFQSSYLMQMHRAYLHSEKAELKNLDQNASNGLENNINDTEKDEFTEDYALHNNDAIGTDVKSHGNSSKENGDACKDAISEDLQKLQTMILQLNNLNVGKATICTVCNKEEENHFSLRAHMMSEHGIMMEETNFPDMDRISDQKMTQIAPTCDIATYCFICKKDFYSKAQLKQHIEEFHSYMTLSSATSVSLISEVKEEFEARTPSEKPAQQTSSVAAHEKRISLTPTNSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICDICNKELCSKYFLRVHKQNTHGIAEEGSVSQSYSRDASNGHSVQNLNENDQTLKPELSEQSQRYFTHFTEVCTICNRRFRSTKWLKSHLLNDHGESGMEKWKELDCQYKMSQQGKQQHNIRVTVSSNNHTAGGQMVTYTSALKIPSNWHGSETDGNCLRGSEQAILSHSNEVEGSRTFTNLFGAPETTMKSYHCSYCSFSTPVLAFLFVHEKSHVGLSSQPVPDTAKTLKCPICLQCFVQAEVFQHHILTHQFSGMFNPFFSSVPVTPFPTHTGNIHEKLKPSPETREEGRIKGEDKYNQVPYIVTEEDCDGGKYIFQCSKCSQRFRTREVCLSHIENVHNVNISSQSTSSCSIETIPMKLTSQELYKCTRCEFSSVHTLALRKHIKQEHRTKISRPEACHDNRDVTSVDVSTLSEESGTEEVKKKLQEAAMKSQVPASYAVPQNHIPTLDEFIMQPFLLEEPDDRITSEQDSQLHFDRKFVPSLVFLPVKEKLSGPLTVSFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00821326; iTF_00435148; iTF_00955932;
- 90% Identity
- -
- 80% Identity
- -