Tsin062670.1
Basic Information
- Insect
- Tenodera sinensis
- Gene Symbol
- -
- Assembly
- GCA_030765045.1
- Location
- CM060968.1:133066458-133068089[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 3.2 1.3e+03 2.5 0.0 2 15 9 22 8 24 0.89 2 24 3.2 1.3e+03 2.5 0.0 2 15 31 44 30 46 0.89 3 24 3.2 1.3e+03 2.5 0.0 2 15 53 66 52 68 0.89 4 24 3.2 1.3e+03 2.5 0.0 2 15 75 88 74 90 0.89 5 24 3.2 1.3e+03 2.5 0.0 2 15 97 110 96 112 0.89 6 24 3.2 1.3e+03 2.5 0.0 2 15 119 132 118 134 0.89 7 24 1.6 6.5e+02 3.4 0.0 2 16 141 155 140 157 0.89 8 24 3.2 1.3e+03 2.5 0.0 2 15 163 176 162 178 0.89 9 24 3.2 1.3e+03 2.5 0.0 2 15 185 198 184 200 0.89 10 24 3.2 1.3e+03 2.5 0.0 2 15 207 220 206 222 0.89 11 24 3.2 1.3e+03 2.5 0.0 2 15 229 242 228 244 0.89 12 24 3.2 1.3e+03 2.5 0.0 2 15 251 264 250 266 0.89 13 24 3.2 1.3e+03 2.5 0.0 2 15 273 286 272 288 0.89 14 24 2.8 1.1e+03 2.6 0.0 2 15 295 308 294 311 0.88 15 24 3.2 1.3e+03 2.5 0.0 2 15 317 330 316 332 0.89 16 24 3.2 1.3e+03 2.5 0.0 2 15 339 352 338 354 0.89 17 24 3.2 1.3e+03 2.5 0.0 2 15 361 374 360 376 0.89 18 24 8.7 3.5e+03 1.1 0.1 2 14 383 395 382 398 0.82 19 24 3.2 1.3e+03 2.5 0.0 2 15 405 418 404 420 0.89 20 24 3.2 1.3e+03 2.5 0.0 2 15 427 440 426 442 0.89 21 24 8.7 3.5e+03 1.1 0.1 2 14 449 461 448 464 0.82 22 24 3.2 1.3e+03 2.5 0.0 2 15 471 484 470 486 0.89 23 24 3.2 1.3e+03 2.5 0.0 2 15 493 506 492 508 0.89 24 24 3.7 1.5e+03 2.3 0.1 2 15 515 528 514 531 0.85
Sequence Information
- Coding Sequence
- ATGGTAACCAATGAAGTTCTACTGAGGTGCGATTATTGCTGGGCTGTAACAGCTCGCCAGTATAATATCGTAACCAATGAAGTTCTACTGAGGTGCGATTATTGCTGGGCTGTAACAGCTCGCCAGTATAATATCGTTACCAATGAAGTTCTACTGAGGTGCGATTATTGCTGGGCTGTAACAGCTCGCCAGTATAATATCGTAACCAATGAAGTTCTACTGAGGTGCGATTATTGCTGGGCTGTAACAGCTCGCCAGTATAATATCGTTACCAATGAAGTTCTACTGAGGTGCGATTATTGCTGGGCTGTAACAGCTCGCCAGTATAATATCGTTACCAATGAAGTTCTACTGAGGTGCGATTATTGCTGGGCTGTAACAGCTCGCCAGTATAATATCGTTACCAATGAAGTTCTACTGAGGTGCGATTATTGCTGGGCTGTAACAGCTCGCCAGTATAATATGGTAACCAATGAAGTTCTACTGAGGTGCGATTATTGCTGGGCTGTAACAGCTCGCCAGTATAATATCGTTACCAATGAAGTTCTACTGAGGTGCGATTATTGCTGGGCTGTAACAGCTCGCCAGTATAATATCGTAACCAATGAAGTTCTACTGAGGTGCGATTATTGCTGGGCTGTAACAGCTCGCCAGTATAATATCGTTACCAATGAAGTTCTACTGAGGTGCGATTATTGCTGGGCTGTAACAGCTCGCCAGTATAATATCGTAACCAATGAAGTTCTACTGAGGTGCGATTATTGCTGGGCTGTAACAGCTCGCCAGTATAATATCGTAACCAATGAAGTTCTACTGAGGTGCGATTATTGCTGGGCTGTAACAGCTCGCCAGTATAATATCGTAACCAATGAAGTTCTACTGAGGTGCGATTATTGCTGGGCTGTAACAGCTCGCCAGTATAATATCCTTACCAATGAAGTTCTACTGAGGTGCGATTATTGCTGGGCTGTAACAGCTCGCCAGTATAATATCGTAACCAATGAAGTTCTACTGAGGTGCGATTATTGCTGGGCTGTAACAGCTCGCCAGTATAATATCGTTACCAATGAAGTTCTACTGAGGTGCGATTATTGCTGGGCTGTAACAGCTCGCCAGTATAATATCGTAACCAATGAAGTTCTACTGAGGTGCGATTATTGCTGGGCTGTAACAGCTCGCCAGTGTAATATCGTAACCAATGAAGTTCTACTGAGGTGCGATTATTGCTGGGCTGTAACAGCTCGCCAGTATAATATCGTTACCAATGAAGTTCTACTGAGGTGCGATTATTGCTGGGCTGTAACAGCTCGCCAGTATAATATCGTTACCAATGAAGTTCTACTGAGGTGCGATTATTGCTGGGCTGTAACAGCTCGCCAGTGTAATATCGTAACCAATGAAGTTCTACTGAGGTGCGATTATTGCTGGGCTGTAACAGCTCGCCAGTATAATATCGTAACCAATGAAGTTCTACTGAGGTGCGATTATTGCTGGGCTGTAACAGCTCGCCAGTATAATATCGTAACCAATGAAGTTCTACTGAGGTGCGATTATTGCTGGGCTGTAACAGCTCGCCAGTATGACGTGAAATATCGTCGGCAATTTTTTGAAGGTCCTTACGAGGACAAATAA
- Protein Sequence
- MVTNEVLLRCDYCWAVTARQYNIVTNEVLLRCDYCWAVTARQYNIVTNEVLLRCDYCWAVTARQYNIVTNEVLLRCDYCWAVTARQYNIVTNEVLLRCDYCWAVTARQYNIVTNEVLLRCDYCWAVTARQYNIVTNEVLLRCDYCWAVTARQYNMVTNEVLLRCDYCWAVTARQYNIVTNEVLLRCDYCWAVTARQYNIVTNEVLLRCDYCWAVTARQYNIVTNEVLLRCDYCWAVTARQYNIVTNEVLLRCDYCWAVTARQYNIVTNEVLLRCDYCWAVTARQYNIVTNEVLLRCDYCWAVTARQYNILTNEVLLRCDYCWAVTARQYNIVTNEVLLRCDYCWAVTARQYNIVTNEVLLRCDYCWAVTARQYNIVTNEVLLRCDYCWAVTARQCNIVTNEVLLRCDYCWAVTARQYNIVTNEVLLRCDYCWAVTARQYNIVTNEVLLRCDYCWAVTARQCNIVTNEVLLRCDYCWAVTARQYNIVTNEVLLRCDYCWAVTARQYNIVTNEVLLRCDYCWAVTARQYDVKYRRQFFEGPYEDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -