Basic Information

Insect: Tenodera sinensis
Gene Symbol: -
Assembly: GCA_030765045.1
Location: CM060971.1:24034637-24038014[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 5e-06 0.002 20.7 2.3 1 23 424 446 424 446 0.99

2 8 0.0075 3 10.7 0.2 1 23 449 471 449 471 0.97

3 8 0.29 1.1e+02 5.7 1.2 3 23 481 501 480 501 0.98

4 8 0.00098 0.39 13.5 0.6 1 23 504 526 504 526 0.98

5 8 4.6 1.8e+03 2.0 0.8 3 11 534 542 533 542 0.91

6 8 7.7e-06 0.0031 20.1 2.2 1 23 541 563 541 563 0.98

7 8 1.7e-05 0.0066 19.1 2.0 1 23 569 591 569 591 0.99

8 8 0.022 8.7 9.3 6.6 1 23 597 620 597 620 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	5e-06	0.002	20.7	2.3	1	23	424	446	424	446	0.99
2	8	0.0075	3	10.7	0.2	1	23	449	471	449	471	0.97
3	8	0.29	1.1e+02	5.7	1.2	3	23	481	501	480	501	0.98
4	8	0.00098	0.39	13.5	0.6	1	23	504	526	504	526	0.98
5	8	4.6	1.8e+03	2.0	0.8	3	11	534	542	533	542	0.91
6	8	7.7e-06	0.0031	20.1	2.2	1	23	541	563	541	563	0.98
7	8	1.7e-05	0.0066	19.1	2.0	1	23	569	591	569	591	0.99
8	8	0.022	8.7	9.3	6.6	1	23	597	620	597	620	0.97

Sequence Information

Coding Sequence: ATGAAACTGTGTAATTCCCCTCAGGTTGGCAGCACATTGCTGCAGATCAAGAAGAGGTCAAGTACACACACGCCAACAAGGTTACAGGAACACAATATTGGCACGCCAACAAGGTTACAGGAACACAATATTGGTACGCCAACAAGGTTACAGGAACACAATATTGGCACGCCCCAGGTAATTTCTCTGCAGGTCAAAGAGAGCTCACACTTACAAAACGCTGTAAAGTTAGAGGAAGCCAATATTGGCAGTGTTGCCACTCAACAGAATGTAGCGGAGATTAAAAGTGGTTCCCCTTTACAGAATTCTATAAGTTTACGGAACCAAAATGGAAGTGCAGTAACTTTGTGTGATAAAAAACCATTGACATTGAACAGTTGTATTAAACAGAATCCTATTCCAAATAGTTGCAGTGTTGCCACCCATCCGGTGATGTTACAACTGGGCAAGAACAGTGTCGCATCCAACAGTAGTGACACGAAGTCCCAGGAATATAACACTGGAGTGCAGTTGAGTAGTCTGGCCACTGCACCTTTAGTAATGGTCTTAAAGGAGAACAAAACCAATGTGTCTTCAGACATTTCTGTCGTCAAGAAGGAGCAACTCGGTAACAGAGTTAACGAGAGCAGTGTTGTCACTACAAAGTCAGTCTTGCAGCAGAAGAAACAAAATCTCACACTGAGCAGTACACAGACACAAAAGTCAAAGATTTACACATATTCCAAATGGAAGTGTTTCATACCAGTTAAGCTGCTAGAGCAAGGTAAGGGCTTGAATTTAAAATTACCCACTTGCAGTGGGTCAGATAGACCAGTGTCTGGTGAAGTTTACAGTGGGTCAGATAGACCAATCTCTAGTGATGTTTCCAGTGGGTCAGATGGACTAGTACCTGATGAAGTTTCTGATAGTTCAGATGGACCAGTGTCTGGTGAAGTTTACAGTGGGTCAGATAGACCAATCTCTAGTGATGTTTCCAATGGGTCAAATGGACCAGCTTCTGGTGAAGTTTCTAATGGGTCAGATAGACCAATCTCTAGTGATGTTTCCAATTGGTCAAATGGACCAGCTTCTGGTGAAGTTTCTAATGGGTCGGATAGACCAATCTCTAGTGATGTTTCCAATGGGTCAAATGGACCAGCTTCTGGTGAAGTTTCTAATGGGTCAAATAGACCAATCTCTAGTGATGTTTCCAATGGGTCAAATGGACCAGCTTGTGGTGAAGTTTCTAATGGGTCAGATAGAACTAAGGGTAGGTGGCCAGTGCCACAATATACATGTGAGGATTGTGGGAAGAAGTTGAACAACAAATCCACATGGTATAAACACAGACGGACCCATAAAACCTTCAGTTGTGAATATTGTGGTTTGCAGCTTGCGACAATACAGGAACTGAAGGTGCACCGTGTAAAACATAGAGCTGACACACCAGAAGGTGTCCTTTGTGAAACATGTGGCCTGACTTTGACAGAGTACCACTTGTACGTGCAACACAAGAGGCTTCATGGACCTTACCAGTGCCCCATCTGCAAGAAACTCTACTCAAGCAAACGTATTCTGGAGAGTCATCGTCTAATACACACGGGAGAGAAGCAGGTCATCTGTGAGAAGTGTGAGAAGCCCTTTAAATGTACAGAGTGTGACAACACTTACTCATACAAAAGTCTGCTGACAAGACACAAGATCACTCATACAGGTGAGAAGAAGTACGAGTGCCAGTACTGTAACAAGAGGTTCACGGCCAGCTCTTCTAGAGTACGCCATGTCCGCACGCACACTGGCGACACACCCTACAAATGTACTGAATGTGACAGAACATTTGTATGCCGTAAATATCTCTGCGATCACAGGCTTAAGGTGCATAGCAACCAGCAATAA
Protein Sequence: MKLCNSPQVGSTLLQIKKRSSTHTPTRLQEHNIGTPTRLQEHNIGTPTRLQEHNIGTPQVISLQVKESSHLQNAVKLEEANIGSVATQQNVAEIKSGSPLQNSISLRNQNGSAVTLCDKKPLTLNSCIKQNPIPNSCSVATHPVMLQLGKNSVASNSSDTKSQEYNTGVQLSSLATAPLVMVLKENKTNVSSDISVVKKEQLGNRVNESSVVTTKSVLQQKKQNLTLSSTQTQKSKIYTYSKWKCFIPVKLLEQGKGLNLKLPTCSGSDRPVSGEVYSGSDRPISSDVSSGSDGLVPDEVSDSSDGPVSGEVYSGSDRPISSDVSNGSNGPASGEVSNGSDRPISSDVSNWSNGPASGEVSNGSDRPISSDVSNGSNGPASGEVSNGSNRPISSDVSNGSNGPACGEVSNGSDRTKGRWPVPQYTCEDCGKKLNNKSTWYKHRRTHKTFSCEYCGLQLATIQELKVHRVKHRADTPEGVLCETCGLTLTEYHLYVQHKRLHGPYQCPICKKLYSSKRILESHRLIHTGEKQVICEKCEKPFKCTECDNTYSYKSLLTRHKITHTGEKKYECQYCNKRFTASSSRVRHVRTHTGDTPYKCTECDRTFVCRKYLCDHRLKVHSNQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -