Tsin063362.1
Basic Information
- Insect
- Tenodera sinensis
- Gene Symbol
- -
- Assembly
- GCA_030765045.1
- Location
- CM060969.1:3667378-3710959[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 6.4e-05 0.025 17.3 3.3 1 23 198 220 198 220 0.98 2 16 0.41 1.6e+02 5.3 0.5 1 19 224 242 224 244 0.95 3 16 2.4e-06 0.00094 21.7 1.9 2 23 259 280 259 280 0.97 4 16 0.084 33 7.4 1.4 2 22 285 305 284 305 0.93 5 16 0.0014 0.54 13.1 3.1 1 23 313 335 313 335 0.97 6 16 3.3 1.3e+03 2.4 0.0 1 20 339 358 339 359 0.81 7 16 0.13 50 6.9 1.1 2 23 934 955 934 955 0.95 8 16 0.15 59 6.6 0.3 3 15 961 973 960 977 0.85 9 16 0.0043 1.7 11.5 0.6 2 23 985 1006 984 1006 0.90 10 16 3.1 1.2e+03 2.5 0.7 1 13 1011 1023 1011 1026 0.86 11 16 0.0021 0.85 12.4 3.0 1 23 1047 1069 1047 1069 0.97 12 16 0.00098 0.39 13.5 1.8 2 21 1075 1094 1074 1096 0.94 13 16 1.2e-05 0.0046 19.6 0.1 1 23 1102 1124 1102 1124 0.96 14 16 2.8e-05 0.011 18.4 2.6 2 23 1133 1154 1132 1154 0.96 15 16 8.6e-05 0.034 16.8 2.6 1 23 1160 1183 1160 1183 0.97 16 16 0.0024 0.97 12.3 3.0 1 23 1188 1211 1188 1211 0.96
Sequence Information
- Coding Sequence
- ATGACAAGTATAGTCATAGCAAATTTAACACCACAGTTCTCCCAAAATGGGGCACAAACTATATATGTTAGCAACACAAACGAAGTGTTTCCAGATGGCGAGGTTAACGACAGCCAGAACGAGGCTTTGAATGTCCTTCTGGAACAGCTTCAGTCGGAGAGTGCATTCACCACAGGCAACAATGCCTCGAAAAATAACACAGTCTCTAGTGAGAATCATAGCAGCAACATTCTCACCACCTCGTCTAACTTTGACTCAGCAGTGATAGAGAATTGTGAAGATATTGGAAATGACTTGTTAACAAAAATACAATTACAAACAGATGAAGTTTTACATTCAGACAGGGACAAACCTCAACAAGTTCATAACAGTGAGTTTCTGAACACGTTTCAGTCATGCAGTGATGAAGTAGTGTCGGAGAGTAATGAGAAAAGTAACTGTACAAAAGAAAGTGGCATCAACACACAGAATACTGCACTTCTAAATCTCATATCCTGCGCAGACATTGGAGCGGAACCTAAGCCATCTGATAATGTAGATGATGCAGGTTTCATTGCTGCTGATGACAAATTGTCAGATATTGGGCCCCCGTATAATTGTGACATATGCAATAAGGAGTTCCACAAGGCAGACTACCTTTACCGTCATCTACGCAAGCATACAGGAGAATTCACTTGCGTCTCTTGTTTGGCTGTGTTTGCACGCAAGGAGAGTCTAGTAAACCATTCCTGCTTTGTCGATAATAACAGCCAATCAGAAAACAAGTCATCACGCACATGTCCCTACTGCCAGAAGGTTTTCCGTATGAAGAAACTGCTCAAGAGGCATATGGCAAAACATACAGGTGAATGGAAATGCTACAGTTGTCAGCGGATATACTCCTCCAGAACAACACTAGCTGCACACAGATGCACCAGTAAGAAGACAACTCAGATGTATCATTGCCAAGTGTGTAGCCGAGAGTTTCTGCGGCAGAGTTACCTCAATAAGCACATGTTACTGCATAGGGAACGGCATCCTTGTGGTACTTGTGGCAAGAAACTGCCCGCAGGCGAGGCCCTTACGCTGCACCAGGGGTACTGTTCACAGGTAATGCTTCCTTGTTTCTGGGGTGCTTGGCAGCTGGCGAGGCCCTTACGCTGCACCAGCGGTACTGTACACAGCTGGCGAGGCCCTTACGCTGCACCAGGGGTACTGTTCACAGGTAATGCTTCCTTGTTTCTGGGGTGCTTGGCAGCTGGCGAGGCCCTTACGCTGCACCAGGGGTACTGTTCACAGGTAATGCTTCCTTGTTTCTGGGGTGCTTGGCAGCTGGCAAGGTCCTTACGCTGCACCAGGGGTAATGCTTCCTTGTTTCTGGGGTGCTTAGCAGCTGGCGAGGCCCTTACGCTGCACCAGGGGTACTGTTCACAGGTAATGCTTCCTTGTTTCTGGGATGCTTGGCAGCTGGCGAGGCCCTTACGCTGCACCAGGGGTAATGCTTCCTTGTTTCTGGGGTGCTTGGCAGCTGGCGAGGCCCTTACGCTGCACCAGGGGTACTGTTCACAGGTAATGCTTCCTTGTTTCTGGGGTGCTTGGCAGCTGGCAAGGTCCTTACGCTGCACCAGGGGTACTGTTCACAGCAGCTGGCGAGGCCCTTACGCTGCACCAGGGTTACTGTTCACAGGTAATGCTTCCTTGTTTCTGGGGTGCTTGGCAGCTGACGAGGCCCTTACGCTGCACCAGGGTTATTGTACACAGGTAATGCTTCCTTGTTTCTGGGGTGCTTGGCAGCTGACGAGGCCCTTACGCTGCACCAGGGGTACTGTTCACAGCTGGCAAGGTCCTTACGCTGCACCAGGGGTACTGTTCACAGGTAATGCTTCCTTGTTTCTGGGGTGCTTGGCAGCTGACGAGGCCCTTACGCTGCACCAGGGGTACTGTTCACAGGTAATGCTTCCTTGTTTCTGGGGTGCTTGGCAGCTGGCGAGGCCCTTACGCTGCACCAGGGTTACTGTTCACAGCTGGCGAGGTCCTTACGCTGCACCAGGGTTACTGTTCACAGGTAATGCTTCCTTGTTTCTGGGGTTCTTGGCAGCTGGCGAGGCCCTTACACTGCACCAGGGTTACAGTTCAGAGGTAATGCTTCCTTGTTTCTGGGGTGCTTGGCAGCTGGCGAGGCCCTTATGCTACACCAGGGGTAATGCTTCCTTGTTTCTGGGGTGCTTGGCAGCTGGCAAGGCCCTTATGCTACACCAGGGGTACTGTTCACAGGTAATGCTTCCTTGTTTCTGGGGTGCTTGGCAGCTGGCGAGGTCCTTACGCTGCACCAGGGGTACTGTTCACAGCATCTGGCGAGGCCCTTACGCTGCACCAGGGGTACTGTTCACAGGTAATGCTTCCTTGTTTCTGGGGTGCTTAGCAGCTGGCGAGGCCCTTACGCTGCACCAGGGTTACTGTTCACAGGTAATGCTTCCTTGTTTCTGGGGTGCTTGGCAGCTGGCAAGGTCCTTACGCTGCACCAGGGGTACTGTTCACAGCTGGCGAGGCCCTTATGCTGCACCAGGGGTACTGTACACAGGTAATGCTTCCTTGTTTCTGGGGTGCTTGGCAGCTGGCAAGGTCCTTACGCTGCACCAGGGGTACTGTTCACAGGTAATGCTTCCTTGTTTCTGGGGTGCTTGGCAGCTGGCGAGGCCCTTACGCTGCACCAGGGGTAATGCTTGCTTGTTTCTGGGGTGCTTGGCAGCTGGCGAGGCCCTTACACTGCACCAGGGTTACTGTTCACAGGAGAAGCTGCTGGAGACAGCAAGAGAGGCCACGTGTCCCAACTGTAGTACGACGTTTGTACATGTGTTGACATACAGACAGCATGTTCTGGAGCACACACACCCGCTCCTGTGCCAGCAGTGTGGTCGAAGGTTCTCCACCAACGAAACCAAAGTGCTACACTGCTGCACCAATAAGATGCTGCAATGTGATTTGTGTCTCAAGAGCTTCTCACACATGTCCGAACTTGTGCAACACAATGCAGCACATGGTGTCCCCCAGTTTCACTGTTACGAGTGTGGCAACAGCTTTCATCACAGCACAGCTGCACGGTACGTAACCACCAAGCTTAATGTTGGTAGTTCCCAGGACTCACACGGTGAGCGCAGATTTGAGTGTGAAGTCTGCGGCAAGAGGTTTCACAGGAAAGATATACTCCAGGAACACCACACCGTGCACCGGGCACCACAGATCCCATGTCCCATATGTAACAAGAAACTCAAGACCAAGAAGTCTCTGGACGTTCACATGCGGTGTCACACTGGGGAGAAGCCCTACAGCTGCGGGGAGTGTGGAAAGGAATTCTTCCAGAAGGGCAACCTGTTGAAGCATGCAGCGGTACATAACCCGCTGGCCAGGAGACTGCTGACGTGTGACCATTGTAACAAGAACTTCACGTCACGTGAATATCTGTCACAGCACATGTTGGAACATACCCAGGGTCGGATACATCAGTGTGAACTCTGTGACAAAGGCTTTGTCAAGGAACACATGCTGAAGGCCCATATTAGACAGTACCATGGTGGACTGACATTTGTGTGCCCGTACTGCCACATGTCGGTAAGGTACCGACAGTCAATGCGAAGGCACCTGGAGAAGCGACATACTGACATGCAGCAGGAATGGGATGTACAAGGGTTCCTGGATAAGCTAGAAGCAGGTGGCAACACTGAAGTGTCCACATCCCTTGTGGCAACATCACAGCAGACCAGTCCAGTTATTGGCAACATGGACATTCTACAGACGGACACACAAGGGGAAGGTGGAGAGATATTACTGACGGTGTCTAGGATTCCTCTGGTTGAAGGGCAAGAGTCTGAAGAGCAGACAGATATCGGCAGTCAGATGGAACTGCAAGTAGAGACAGAGGTGCAAGCAGATGAAGTTCCTGTCGGCAATGCTTTCATCTTCAATGGGACTGTTACACAGGAAGATATTGGGAACAGCGAAGGCAACATATTACTCTATGTGCTGGATACGGGAGATGTTGCTATAGACCCAGGTTACTGTGCTGGAGTGGACTGA
- Protein Sequence
- MTSIVIANLTPQFSQNGAQTIYVSNTNEVFPDGEVNDSQNEALNVLLEQLQSESAFTTGNNASKNNTVSSENHSSNILTTSSNFDSAVIENCEDIGNDLLTKIQLQTDEVLHSDRDKPQQVHNSEFLNTFQSCSDEVVSESNEKSNCTKESGINTQNTALLNLISCADIGAEPKPSDNVDDAGFIAADDKLSDIGPPYNCDICNKEFHKADYLYRHLRKHTGEFTCVSCLAVFARKESLVNHSCFVDNNSQSENKSSRTCPYCQKVFRMKKLLKRHMAKHTGEWKCYSCQRIYSSRTTLAAHRCTSKKTTQMYHCQVCSREFLRQSYLNKHMLLHRERHPCGTCGKKLPAGEALTLHQGYCSQVMLPCFWGAWQLARPLRCTSGTVHSWRGPYAAPGVLFTGNASLFLGCLAAGEALTLHQGYCSQVMLPCFWGAWQLARSLRCTRGNASLFLGCLAAGEALTLHQGYCSQVMLPCFWDAWQLARPLRCTRGNASLFLGCLAAGEALTLHQGYCSQVMLPCFWGAWQLARSLRCTRGTVHSSWRGPYAAPGLLFTGNASLFLGCLAADEALTLHQGYCTQVMLPCFWGAWQLTRPLRCTRGTVHSWQGPYAAPGVLFTGNASLFLGCLAADEALTLHQGYCSQVMLPCFWGAWQLARPLRCTRVTVHSWRGPYAAPGLLFTGNASLFLGFLAAGEALTLHQGYSSEVMLPCFWGAWQLARPLCYTRGNASLFLGCLAAGKALMLHQGYCSQVMLPCFWGAWQLARSLRCTRGTVHSIWRGPYAAPGVLFTGNASLFLGCLAAGEALTLHQGYCSQVMLPCFWGAWQLARSLRCTRGTVHSWRGPYAAPGVLYTGNASLFLGCLAAGKVLTLHQGYCSQVMLPCFWGAWQLARPLRCTRGNACLFLGCLAAGEALTLHQGYCSQEKLLETAREATCPNCSTTFVHVLTYRQHVLEHTHPLLCQQCGRRFSTNETKVLHCCTNKMLQCDLCLKSFSHMSELVQHNAAHGVPQFHCYECGNSFHHSTAARYVTTKLNVGSSQDSHGERRFECEVCGKRFHRKDILQEHHTVHRAPQIPCPICNKKLKTKKSLDVHMRCHTGEKPYSCGECGKEFFQKGNLLKHAAVHNPLARRLLTCDHCNKNFTSREYLSQHMLEHTQGRIHQCELCDKGFVKEHMLKAHIRQYHGGLTFVCPYCHMSVRYRQSMRRHLEKRHTDMQQEWDVQGFLDKLEAGGNTEVSTSLVATSQQTSPVIGNMDILQTDTQGEGGEILLTVSRIPLVEGQESEEQTDIGSQMELQVETEVQADEVPVGNAFIFNGTVTQEDIGNSEGNILLYVLDTGDVAIDPGYCAGVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -