Tsin088645.2
Basic Information
- Insect
- Tenodera sinensis
- Gene Symbol
- -
- Assembly
- GCA_030765045.1
- Location
- JAUKNM010000114.1:200426-201676[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.3e-06 0.0013 21.3 2.5 1 23 9 31 9 31 0.97 2 13 2.4e-05 0.0094 18.6 0.6 1 23 37 59 37 59 0.97 3 13 0.00041 0.16 14.7 8.2 1 23 65 87 65 88 0.96 4 13 1.1e-05 0.0042 19.7 1.2 1 23 103 125 103 125 0.98 5 13 0.0092 3.7 10.5 1.0 2 23 141 163 140 163 0.96 6 13 0.0072 2.8 10.8 1.4 1 23 169 191 169 191 0.99 7 13 0.0016 0.62 12.9 0.1 1 23 220 242 220 242 0.98 8 13 0.0014 0.56 13.0 2.6 1 23 248 270 248 270 0.98 9 13 9.4e-06 0.0037 19.9 2.6 1 23 276 298 276 298 0.95 10 13 0.00022 0.088 15.5 2.0 1 23 304 326 304 326 0.98 11 13 0.0043 1.7 11.5 2.3 1 23 332 354 332 354 0.96 12 13 1e-07 4e-05 26.1 0.7 1 23 360 382 360 382 0.98 13 13 3.3e-05 0.013 18.2 0.5 3 23 390 410 389 410 0.95
Sequence Information
- Coding Sequence
- ATGGTACATGAAGGAGCACGTCCTTTCTGCTGTGAACAGTGTGGCAAACGGTTCTACTCTAAGGCACGTCTGGAAGCTCATCAGCGTGTGCACTCTGGAGAACGCCCATTTGAATGTGAACTATGTGGACGTCGTTTCTATGACCGTGAGACACTCAAAGGTCATTATGTGACACACATGCATGTCAAGCCATACCAGTGTGATCTTTGTGGAGCATGTTGTGGTCGTAAAAGTATGCTGAAGCAACATATGCACTCACATCATTCAAACCAAAATGTTGCCAAAAAGGTGGCTTCGCTCATACATTACTattgtaaaatatgtaatgaGACATTTACTAATTCTACAGATGTAGTAAATCATCGCAGCACACATTGGGACACTAGCACTGCTAACAATGCAGATGGAAAACGTATTCTTATTTGCGAGTTCTGTAGAATGCATTTCACTGGAGCAGCTGCCCTTGGCAGGCATCGTAAAACAAAACATCCCGATGAACGACCATATGTTTGCAGTATTTGCCAGGAGAGATCACAAACGCTTCATGAAGCTCGAGTTCATCGTAGAACTCATACATCAGAAGAAAATGATGAAACAAAAGGTACAGGAAACATCCTCAGGGCAGAATCTGGAGGAGGACAAGAAAACGTAAAAGTGTTCATTTGTGAAGAGTGTGGAGTATCCTCTATTGGTCGGCGGAAGTTTGCTGCACACATGAAGAGTCATAAGGCACAACTTGCGTATCAGTGCTTGACATGTGGCAGACACTTTTCTGAGAAGCAGAGGTTGTTGGTTCATTCACGGTTGCATTCTGGCGAGAAGCCTTATTGCTGTACAAACTGTGGAAAGCGTTTCACACAGTCCTCAGCATTGTACACACATGCTCTCTTACATACAGGTGAAAAGCCACATAAATGTGATCTTTGTGGGAAGGCATTTCGCATTAAAGCAGATCGCGACAATCATAGGCGCACCCATACTGGAGAGAAACCATATCGCTGTGAATACTGCCAAAAACAATTCCGTACAGGACAGGTATATTATCAACACCGTATGATTCACACTGGAGAGCGGCGATACCCGTGTGATATTTGTGGAAAGGCATTCAAGAGATCTCACACACTTGCTGTTCATAAACGTATTCATACAGGCGAGAAACCAAATATTTGTGATATTTGTGGGCGAGGTTTTAGACAAAGAACAGATATGAAGAAGCATAGAGCACTGCACACAAATACGCTGTTCACATGA
- Protein Sequence
- MVHEGARPFCCEQCGKRFYSKARLEAHQRVHSGERPFECELCGRRFYDRETLKGHYVTHMHVKPYQCDLCGACCGRKSMLKQHMHSHHSNQNVAKKVASLIHYYCKICNETFTNSTDVVNHRSTHWDTSTANNADGKRILICEFCRMHFTGAAALGRHRKTKHPDERPYVCSICQERSQTLHEARVHRRTHTSEENDETKGTGNILRAESGGGQENVKVFICEECGVSSIGRRKFAAHMKSHKAQLAYQCLTCGRHFSEKQRLLVHSRLHSGEKPYCCTNCGKRFTQSSALYTHALLHTGEKPHKCDLCGKAFRIKADRDNHRRTHTGEKPYRCEYCQKQFRTGQVYYQHRMIHTGERRYPCDICGKAFKRSHTLAVHKRIHTGEKPNICDICGRGFRQRTDMKKHRALHTNTLFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00955782; iTF_00434997;
- 90% Identity
- -
- 80% Identity
- -