Tsin001726.2
Basic Information
- Insect
- Tenodera sinensis
- Gene Symbol
- -
- Assembly
- GCA_030765045.1
- Location
- CM060961.1:56933673-56970796[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.22 86 6.1 0.2 1 23 104 127 104 127 0.94 2 13 0.00016 0.062 16.0 1.1 2 23 152 174 151 174 0.95 3 13 0.00013 0.053 16.2 5.1 1 23 329 351 329 351 0.98 4 13 0.0028 1.1 12.1 2.0 1 23 357 379 357 379 0.97 5 13 6.3e-07 0.00025 23.6 0.2 3 23 387 407 386 407 0.99 6 13 1.2e-06 0.00048 22.7 1.0 2 23 414 435 413 435 0.96 7 13 0.00013 0.052 16.3 0.2 1 23 441 463 441 463 0.97 8 13 2.5e-05 0.0097 18.6 1.1 1 23 469 491 469 491 0.98 9 13 0.051 20 8.1 1.1 1 23 507 529 507 529 0.96 10 13 0.00042 0.17 14.7 0.0 1 23 536 558 536 558 0.97 11 13 3.5e-06 0.0014 21.2 1.6 1 23 564 586 564 586 0.97 12 13 2e-06 0.0008 22.0 1.0 1 23 592 614 592 614 0.98 13 13 0.0001 0.042 16.6 1.3 1 23 620 642 620 642 0.98
Sequence Information
- Coding Sequence
- ATGGGATTTTGTAGCAAGGATGTCTGTTTCATTGTGGCAGATGATGTGTTTCCTGGGTACTTCCAAGGCATGCTGGACAACTGCCGATTTCTCTGtGTTGTGAATAGAGAAGACAAATCACAAGATGATATTGCACAAACATCAGAACATCCTGAAGCTGCAGTTGATCAGGAAGGACAAGAAGAAGTAGAAAGGATAGAGCCAGAAATAGCAGTTGAAGCTCTATCCATTCATAATGGTGAGAAACATTTACCAACTGAAGTCAAGGTGGAGGCAGATCCGTGGATAGTAGAGgatgaaaataaaacatatcgGTGTTCACAATGCCTAGCAGAATTCCCAGAACGAAAAAAACTTctaattcatgagatttcgaatcATGTCCTTGAAGAGAAGGTGGAGCAGGCTGGTACTGTGGACTTGGCTGTGCAGAAGGCTAATAGGGAGGTGATTTCATGCACAGAGTGTGGACATATATTTGGAGGCAAGAAAACCCTGCGCAAACACATCCGTGAACAACACAATTCTGCAGAGAACATCTGTGAGTTCTGTGGGGCACATTACCAGTCTTACAATAAGCTCTTGATAACTGGACTGCCATCTAGGAGTATCATGAGTGGTTTAGAATTACAACGACATGAAGGCAATGCAGATGACGTTTTAAACTTACATACGGCAACAGTAGTTCAATGCAGATGGCGTGAAGTGTACTGTCTGACGTGCTGTCCTGTAGCATTTACACAGGTACAGGTCGGTGTTTACATGAGGACTCCCATTTTGGAAGAGGAAGTGCTTCGTCATGTGGCTGAGGAGCCTTCAATAATTACTCGACCAGTTGCATGTGAAGTGGGGGTTGTGCAAAGTACTGTTTGGAATGTACTTCGGGAACAACTGCATCCCTACCACCCACAAAGAGTACATGCTCTGTCTTCGGCTGACTTCACATCACGGGTACATCGCCGTCTACATACTAATGAGACACCATTCTGCTGTGACACTTGTGGTTCAAGTTTTCGCTTCAAAAAAGAATTGCGCATCCACAGAAGAACTCATAACCAGAGCAGACCTTTCATGTGTAGGGCATGTGGTAAACAGTGTCCTACGCGCAACTCCCTCTGGCAGCATGAGAAGACCCATAGTGGTGATCGGATTGCTCTCTGTCCACAGTGTGGTAAAGTACTCTCAAACCCACAGAGTCTGCGTGTACACATGCGCACACACTCAAGTGATAGACCTTGTTCTTGTCCTACATGTGGGAAGAGCTTCAAAGATAATGCATCTGTGGCAAAACACATGCTGATGCATTCTGCAAGTAAAGATTATGCTTGTGATGTTTGTGGTCGGGCATTCTATAGCAAGGCTCTTGTGAAACAGCACAAGCTTTCACATTCTGGTGTCAGACCCCACcgttgtgatatttgtggtgctGCATACAATCGTCTGGGAAATTTAAATCAACATAAAAAGAAACACCGTGGGACAGATGGGGAAAAGGCAACATTACCATCAGATCTGCCTcatgagtgtgttgtgtgtggcaaGCGAATGAGGTCAGAACTCACACTCAAGTACCATCTTGCTAAGCATACGGGAGAGAAAAAGCCATTTGACTGTGAAGTGTGTGGCAAGAGATTTGTTGCTGTAGCTCCATATCGAGTGCATATGCGTATTCATACTGGAGAGCGTCCTTATGAGTGTCCTACTTGTTCTAAGACATTCCGCAGTTCTTTCACTCTCAAACAGCATCAGGCTCTTCACAAAGATGAATGTCCTTATGCATGTCCTTATTGTGAGCGGAAGTTCAAACGGTTACAGTCACTAGTAGTTCACCGTCGCACACATACTGGAGAGAAGCCTCATAGATGTCCTACATGTGCTCGTGCTTTTGCACAGAAAGGAGACATGTTAAAACACACCAAAACCCACACCCGTGAAAGAAATTCTGTGTTGACTGTTAAAACAGATAAGGTGGGACCTATTGTTATGGAAATAGAACAAATATCAGATCTTGCACTTAGTGATTCTGAAATGACAAGTGAATTCCTCATTGATATGCCAATTGTAGAGGTGGAGACTGAAATTAACTCAGATATCAATGCAGATATTGCTTAA
- Protein Sequence
- MGFCSKDVCFIVADDVFPGYFQGMLDNCRFLCVVNREDKSQDDIAQTSEHPEAAVDQEGQEEVERIEPEIAVEALSIHNGEKHLPTEVKVEADPWIVEDENKTYRCSQCLAEFPERKKLLIHEISNHVLEEKVEQAGTVDLAVQKANREVISCTECGHIFGGKKTLRKHIREQHNSAENICEFCGAHYQSYNKLLITGLPSRSIMSGLELQRHEGNADDVLNLHTATVVQCRWREVYCLTCCPVAFTQVQVGVYMRTPILEEEVLRHVAEEPSIITRPVACEVGVVQSTVWNVLREQLHPYHPQRVHALSSADFTSRVHRRLHTNETPFCCDTCGSSFRFKKELRIHRRTHNQSRPFMCRACGKQCPTRNSLWQHEKTHSGDRIALCPQCGKVLSNPQSLRVHMRTHSSDRPCSCPTCGKSFKDNASVAKHMLMHSASKDYACDVCGRAFYSKALVKQHKLSHSGVRPHRCDICGAAYNRLGNLNQHKKKHRGTDGEKATLPSDLPHECVVCGKRMRSELTLKYHLAKHTGEKKPFDCEVCGKRFVAVAPYRVHMRIHTGERPYECPTCSKTFRSSFTLKQHQALHKDECPYACPYCERKFKRLQSLVVHRRTHTGEKPHRCPTCARAFAQKGDMLKHTKTHTRERNSVLTVKTDKVGPIVMEIEQISDLALSDSEMTSEFLIDMPIVEVETEINSDINADIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -